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phenix.refine - Macromolecular Refinement
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Input files:
  Model: model_refine_002.pdb
  Data: data.mtz

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Refinement Strategy
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Strategy: Individual sites + Individual B-factors + TLS + waters
Number of cycles: 3
Weight optimization: automatic

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Refinement Progress
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Starting R-work: 0.262
Starting R-free: 0.280

Cycle 1: R-work = 0.255, R-free = 0.272
Cycle 2: R-work = 0.248, R-free = 0.265
Cycle 3: R-work = 0.242, R-free = 0.260

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Final Statistics
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Final R-work: 0.242
Final R-free: 0.260

Resolution: 2.0 A
Number of reflections: 15234
Number of atoms: 658 (including 33 waters)

Geometry:
  Bond RMSD: 0.008 A
  Angle RMSD: 1.18 degrees

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Output Files
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Refined model: model_refine_003.pdb
Map coefficients: model_refine_003.mtz

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phenix.refine completed successfully
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