Linux shecky.unidata.ucar.edu 2.6.23.17-88.fc7 #1 SMP Thu May 15 00:02:29 EDT 2008 x86_64 x86_64 x86_64 GNU/Linux ./configure --enable-netcdf-4 --with-hdf5=/upc/share/ed/local/shecky32 --with-zlib=/upc/share/ed/local/shecky32 --disable-cxx --prefix=/shecky/n4_test/install --disable-compiler-recover && make check check_install configure: netCDF 4.0-snapshot2008070100 checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes configure: checking user options checking whether CXX is set to ''... yes checking whether FC is set to ''... no checking whether F90 is set to ''... no checking whether this is a netCDF-4.x build... yes configure: Processing NetCDF-4 options. checking whether netCDF-4 is to be built... yes checking whether DAP client is to be built... no checking whether new netCDF-4 C++ API is to be built... no checking whether HDF5 should do data conversions... no checking whether extra example tests should be run... no checking whether parallel IO tests should be run... no checking whether a location for the HDF5 library was specified... /upc/share/ed/local/shecky32 checking whether a location for the ZLIB library was specified... /upc/share/ed/local/shecky32 checking whether a location for the SZLIB library was specified... checking whether netCDF-4 logging is enabled... no checking whether netCDF extra tests should be run (developers only)... no checking whether documentation is to be installed... no checking whether Fortran compiler(s) should be tested during configure... yes checking whether configure should try to set compiler flags... yes checking whether FFIO will be used... no checking whether to skip C++, F77, or F90 APIs if compiler is broken... no checking whether only the C library is desired... no checking whether examples should be built... yes checking whether F77 API is desired... yes checking whether F90 API is desired... yes checking whether fortran type sizes should be checked... yes checking whether C API is desired... yes checking where to get netCDF C-only library for separate fortran libraries... checking whether CXX API is desired... no checking whether v2 netCDF API should be built... yes checking whether the ncgen/ncdump should be built... yes checking whether large file (> 2GB) tests should be run... no checking whether benchmaks should be run (experimental)... no checking whether extreme numbers should be used in tests... yes checking where to put large temp files if large file tests are run... . checking whether a win32 DLL is desired... no checking whether separate fortran libs are desired... no configure: finding C compiler checking for xlc... no checking for cc... cc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of cc... gcc3 checking whether cc understands -c and -o together... yes checking for an ANSI C-conforming const... yes configure: finding Fortran compiler (will not be used if Fortran API is not desired) checking whether we are using the GNU Fortran compiler... no checking whether pgf95 accepts -g... yes checking whether we are using the GNU Fortran 77 compiler... no checking whether pgf95 accepts -g... yes configure: setting up Fortran 90 checking for Fortran flag to compile .f90 files... none checking fortran 90 modules inclusion flag... -I checking if Fortran compiler can handle Fortran-90... yes configure: finding C++ compiler (will not be used if C++ API is not desired) checking for cl... no checking for KCC... no checking for CC... no checking for cxx... no checking for cc++... no checking for xlC... no checking for aCC... no checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking dependency style of c++... gcc3 configure: setting up libtool checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 98304 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from cc object... ok checking how to run the C preprocessor... cc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether c++ accepts -g... (cached) yes checking dependency style of c++... (cached) gcc3 checking how to run the C++ preprocessor... c++ -E checking whether we are using the GNU Fortran 77 compiler... (cached) no checking whether pgf95 accepts -g... (cached) yes checking whether we are using the GNU Fortran compiler... (cached) no checking whether pgf95 accepts -g... (cached) yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for ld used by c++... /usr/bin/ld -m elf_i386 checking if the linker (/usr/bin/ld -m elf_i386) is GNU ld... yes checking whether the c++ linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC -DPIC checking if c++ PIC flag -fPIC -DPIC works... yes checking if c++ static flag -static works... no checking if c++ supports -c -o file.o... yes checking if c++ supports -c -o file.o... (cached) yes checking whether the c++ linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for pgf95 option to produce PIC... -fpic checking if pgf95 PIC flag -fpic works... yes checking if pgf95 static flag -Bstatic works... yes checking if pgf95 supports -c -o file.o... yes checking if pgf95 supports -c -o file.o... (cached) yes checking whether the pgf95 linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for pgf95 option to produce PIC... -fpic checking if pgf95 PIC flag -fpic works... yes checking if pgf95 static flag -Bstatic works... no checking if pgf95 supports -c -o file.o... yes checking if pgf95 supports -c -o file.o... (cached) yes checking whether the pgf95 linker (/usr/bin/ld -m elf_i386) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: finding other utilities checking for a BSD-compatible install... /usr/bin/install -c configure: trying to set fortran flags for this platform configure: trying to set flags for this platform checking if _HPUX_SOURCE should be set... no checking if Solaris -Xa option is needed... CFLAGS=-m32 configure: trying to set fortran 90 flags for this platform checking if we need to add to FFLAGS for ifort compiler... FFLAGS=-Bstatic checking if we need to set _LARGE_FILES despite results of previous tests... _LARGE_FILES= checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 configure: displaying some results checking CPPFLAGS... -DpgiFortran checking CC CFLAGS... cc -m32 checking type cc... cc is /usr/bin/cc checking CXX... c++ checking CXXFLAGS... -m32 checking type c++... c++ is /usr/local/bin/c++ checking FC... pgf95 checking FFLAGS... -Bstatic checking type pgf95... pgf95 is /opt/pgi/linux86-64/7.0-7/bin/pgf95 checking F90... pgf95 checking F90FLAGS... -Bstatic checking type pgf95... pgf95 is /opt/pgi/linux86-64/7.0-7/bin/pgf95 checking AR... ar checking AR_FLAGS... cru checking type ar... ar is /usr/bin/ar checking NM... /usr/bin/nm -B checking NMFLAGS... checking for /usr/bin/nm... /usr/bin/nm -B checking nm flags... checking for C-equivalent to Fortran routine "SUB"... sub_ checking for Fortran "byte"... yes checking for Fortran "integer*2"... yes checking if Fortran "byte" is C "signed char"... no checking if Fortran "byte" is C "short"... no checking if Fortran "byte" is C "int"... no checking if Fortran "byte" is C "long"... no checking if Fortran "integer*2" is C "short"... no checking if Fortran "integer*2" is C "int"... no checking if Fortran "integer*2" is C "long"... no checking if Fortran "integer" is C "int"... no checking if Fortran "integer" is C "long"... no checking if Fortran "real" is C "float"... no checking if Fortran "real" is C "double"... no checking if Fortran "doubleprecision" is C "double"... no checking if Fortran "doubleprecision" is C "float"... no checking for Fortran-equivalent to netCDF "byte"... byte checking for Fortran-equivalent to netCDF "short"... integer*2 checking if Fortran 90 compiler capitalizes .mod filenames... no configure: checking types, headers, and functions checking for stdlib.h... (cached) yes checking for sys/types.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for strlcat... no checking for strerror... yes checking for working alloca.h... yes checking for alloca... yes checking whether isnan is declared... yes checking whether isinf is declared... yes checking whether isfinite is declared... no checking whether signbit is declared... no checking for long long int... yes checking for unsigned long long int... yes checking for struct stat.st_blksize... yes checking for IEEE floating point format... yes checking for size_t... yes checking for off_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking for uchar... no checking whether char is unsigned... no checking whether byte ordering is bigendian... no checking size of short... 2 checking size of int... 4 checking size of long... 4 checking size of float... 4 checking size of double... 8 checking size of off_t... 8 checking size of size_t... 4 checking for manual-page index command... checking what to call the output of the ftpbin target... binary-netcdf-4.0-snapshot2008070100_pgf95_pgf95.tar pgf95 c++ checking binary distribution directory... /home/ftp/pub/binary/linux_2.6-x86_64 checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for H5Fflush in -lhdf5... yes checking for H5DSis_scale in -lhdf5_hl... yes checking for H5Pget_fapl_mpiposix in -lhdf5... no checking for H5Pget_fapl_mpio in -lhdf5... no checking whether parallel I/O features are to be included... no checking for H5Pset_deflate in -lhdf5... yes checking for gawk... (cached) gawk checking for flex... flex checking lex output file root... lex.yy checking lex library... none needed checking whether yytext is a pointer... no checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes configure: generating header files and makefiles configure: creating ./config.status config.status: creating Makefile config.status: creating man/Makefile config.status: creating man4/Makefile config.status: creating fortran/Makefile config.status: creating libsrc/Makefile config.status: creating libsrc4/Makefile config.status: creating nctest/Makefile config.status: creating nc_test4/Makefile config.status: creating nc_test/Makefile config.status: creating ncdump/Makefile config.status: creating ncgen/Makefile config.status: creating nf_test/Makefile config.status: creating cxx/Makefile config.status: creating cxx4/Makefile config.status: creating f90/Makefile config.status: creating examples/Makefile config.status: creating examples/C/Makefile config.status: creating examples/CDL/Makefile config.status: creating examples/CXX/Makefile config.status: creating examples/CXX4/Makefile config.status: creating examples/F90/Makefile config.status: creating examples/F77/Makefile config.status: creating win32/Makefile config.status: creating win32/NET/Makefile config.status: creating win32/NET/libsrc/Makefile config.status: creating win32/NET/ncdump/Makefile config.status: creating win32/NET/ncgen/Makefile config.status: creating win32/NET/examples/Makefile config.status: creating win32/NET/nctest/Makefile config.status: creating win32/NET/nc_test/Makefile config.status: creating config.h config.status: creating fortran/nfconfig1.inc config.status: executing depfiles commands config.status: executing libtool commands Making check in f90 make[1]: Entering directory `/shecky/n4_test/f90' pgf95 -I../libsrc4 -I. -c -o typeSizes.o typeSizes.f90 make check-am make[2]: Entering directory `/shecky/n4_test/f90' /bin/sh ../libtool --mode=compile pgf95 -I../libsrc4 -I. -c -o typeSizes.lo typeSizes.f90 libtool: compile: pgf95 -I../libsrc4 -I. -c typeSizes.f90 -o typeSizes.o /bin/sh ../libtool --mode=compile pgf95 -I../libsrc4 -I. -c -o netcdf4.lo netcdf4.f90 libtool: compile: pgf95 -I../libsrc4 -I. -c netcdf4.f90 -o netcdf4.o /bin/sh ../libtool --mode=link pgf95 -I../libsrc4 -I. -o libnetcdff90.la typeSizes.lo netcdf4.lo libtool: link: ar cru .libs/libnetcdff90.a typeSizes.o netcdf4.o libtool: link: ranlib .libs/libnetcdff90.a libtool: link: ( cd ".libs" && rm -f "libnetcdff90.la" && ln -s "../libnetcdff90.la" "libnetcdff90.la" ) make[2]: Leaving directory `/shecky/n4_test/f90' make[1]: Leaving directory `/shecky/n4_test/f90' Making check in fortran make[1]: Entering directory `/shecky/n4_test/fortran' echo '! NetCDF-3.' > netcdf.inc cat ../fortran/netcdf3.inc >> netcdf.inc echo >> netcdf.inc echo '! NetCDF-2.' >> netcdf.inc cat ../fortran/netcdf2.inc >> netcdf.inc echo >> netcdf.inc echo '! NetCDF-4.' >> netcdf.inc cat ../fortran/netcdf4.inc >> netcdf.inc make check-am make[2]: Entering directory `/shecky/n4_test/fortran' depbase=`echo fort-attio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I../libsrc4 -I/upc/share/ed/local/shecky32/include -DpgiFortran -m32 -MT fort-attio.lo -MD -MP -MF $depbase.Tpo -c -o fort-attio.lo fort-attio.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I../libsrc4 -I/upc/share/ed/local/shecky32/include -DpgiFortran -m32 -MT fort-attio.lo -MD -MP -MF .deps/fort-attio.Tpo -c fort-attio.c -o fort-attio.o In file included from fort-attio.c:7: ncfortran.h:26:42: error: NF_INT_IS_C_... not defined: No such file or directory fort-attio.c: In function 'NF_INT_cfF': fort-attio.c:13: error: expected declaration specifiers before 'NF_INTEGER' fort-attio.c:20: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'NF_INTEGER' fort-attio.c:121: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'NF_INTEGER' fort-attio.c:133: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'NF_INTEGER' fort-attio.c:141: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'NF_INTEGER' fort-attio.c:148: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'NF_INTEGER' fort-attio.c:148: error: expected '{' at end of input make[2]: *** [fort-attio.lo] Error 1 make[2]: Leaving directory `/shecky/n4_test/fortran' make[1]: *** [check] Error 2 make[1]: Leaving directory `/shecky/n4_test/fortran' make: *** [check-recursive] Error 1 This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by netCDF configure 4.0-snapshot2008070100, which was generated by GNU Autoconf 2.62. Invocation command line was $ ./configure --enable-netcdf-4 --with-hdf5=/upc/share/ed/local/shecky32 --with-zlib=/upc/share/ed/local/shecky32 --disable-cxx --prefix=/shecky/n4_test/install --disable-compiler-recover ## --------- ## ## Platform. ## ## --------- ## hostname = shecky.unidata.ucar.edu uname -m = x86_64 uname -r = 2.6.23.17-88.fc7 uname -s = Linux uname -v = #1 SMP Thu May 15 00:02:29 EDT 2008 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /opt/pgi/linux86-64/7.0-7/bin/ PATH: /opt/pgi/linux86/7.0-7/bin/ PATH: /shecky/local/bin PATH: /usr/local/bin PATH: /usr/bin PATH: /bin PATH: /opt/gnu/bin PATH: /usr/sbin PATH: /sbin PATH: /opt/bin PATH: /sbin PATH: /usr/kerberos/bin PATH: /usr/X11R6/bin PATH: /opt/absoft10.0/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2237: netCDF 4.0-snapshot2008070100 configure:2278: checking build system type configure:2296: result: x86_64-unknown-linux-gnu configure:2318: checking host system type configure:2333: result: x86_64-unknown-linux-gnu configure:2380: checking for a BSD-compatible install configure:2448: result: /usr/bin/install -c configure:2459: checking whether build environment is sane configure:2502: result: yes configure:2527: checking for a thread-safe mkdir -p configure:2566: result: /bin/mkdir -p configure:2579: checking for gawk configure:2595: found /usr/bin/gawk configure:2606: result: gawk configure:2617: checking whether make sets $(MAKE) configure:2639: result: yes configure:2831: checking user options configure:2874: checking whether CXX is set to '' configure:2878: result: yes configure:2882: checking whether FC is set to '' configure:2886: result: no configure:2890: checking whether F90 is set to '' configure:2894: result: no configure:2898: checking whether this is a netCDF-4.x build configure:2906: result: yes configure:2912: Processing NetCDF-4 options. configure:2917: checking whether netCDF-4 is to be built configure:2925: result: yes configure:2941: checking whether DAP client is to be built configure:2949: result: no configure:2969: checking whether new netCDF-4 C++ API is to be built configure:2977: result: no configure:2981: checking whether HDF5 should do data conversions configure:2989: result: no configure:3000: checking whether extra example tests should be run configure:3008: result: no configure:3012: checking whether parallel IO tests should be run configure:3020: result: no configure:3024: checking whether a location for the HDF5 library was specified configure:3033: result: /upc/share/ed/local/shecky32 configure:3039: checking whether a location for the ZLIB library was specified configure:3047: result: /upc/share/ed/local/shecky32 configure:3053: checking whether a location for the SZLIB library was specified configure:3061: result: configure:3067: checking whether netCDF-4 logging is enabled configure:3075: result: no configure:3169: checking whether netCDF extra tests should be run (developers only) configure:3177: result: no configure:3196: checking whether documentation is to be installed configure:3204: result: no configure:3216: checking whether Fortran compiler(s) should be tested during configure configure:3224: result: yes configure:3229: checking whether configure should try to set compiler flags configure:3237: result: yes configure:3241: checking whether FFIO will be used configure:3249: result: no configure:3262: checking whether to skip C++, F77, or F90 APIs if compiler is broken configure:3270: result: no configure:3274: checking whether only the C library is desired configure:3282: result: no configure:3301: checking whether examples should be built configure:3309: result: yes configure:3313: checking whether F77 API is desired configure:3322: result: yes configure:3327: checking whether F90 API is desired configure:3337: result: yes configure:3341: checking whether fortran type sizes should be checked configure:3349: result: yes configure:3355: checking whether C API is desired configure:3363: result: yes configure:3370: checking where to get netCDF C-only library for separate fortran libraries configure:3386: result: configure:3401: checking whether CXX API is desired configure:3410: result: no configure:3421: checking whether v2 netCDF API should be built configure:3429: result: yes configure:3448: checking whether the ncgen/ncdump should be built configure:3457: result: yes configure:3469: checking whether large file (> 2GB) tests should be run configure:3477: result: no configure:3496: checking whether benchmaks should be run (experimental) configure:3504: result: no configure:3516: checking whether extreme numbers should be used in tests configure:3531: result: yes configure:3545: checking where to put large temp files if large file tests are run configure:3554: result: . configure:3565: checking whether a win32 DLL is desired configure:3573: result: no configure:3597: checking whether separate fortran libs are desired configure:3606: result: no configure:3676: finding C compiler configure:3733: checking for xlc configure:3763: result: no configure:3733: checking for cc configure:3749: found /usr/bin/cc configure:3760: result: cc configure:3796: checking for C compiler version configure:3804: cc --version >&5 cc (GCC) 4.1.2 20070925 (Red Hat 4.1.2-27) Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3808: $? = 0 configure:3815: cc -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --enable-plugin --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-cpu=generic --host=x86_64-redhat-linux Thread model: posix gcc version 4.1.2 20070925 (Red Hat 4.1.2-27) configure:3819: $? = 0 configure:3826: cc -V >&5 cc: '-V' option must have argument configure:3830: $? = 1 configure:3853: checking for C compiler default output file name configure:3875: cc -m32 -DpgiFortran conftest.c >&5 configure:3879: $? = 0 configure:3917: result: a.out configure:3934: checking whether the C compiler works configure:3944: ./a.out configure:3948: $? = 0 configure:3965: result: yes configure:3972: checking whether we are cross compiling configure:3974: result: no configure:3977: checking for suffix of executables configure:3984: cc -o conftest -m32 -DpgiFortran conftest.c >&5 configure:3988: $? = 0 configure:4012: result: configure:4018: checking for suffix of object files configure:4044: cc -c -m32 -DpgiFortran conftest.c >&5 configure:4048: $? = 0 configure:4071: result: o configure:4075: checking whether we are using the GNU C compiler configure:4104: cc -c -m32 -DpgiFortran conftest.c >&5 configure:4111: $? = 0 configure:4128: result: yes configure:4137: checking whether cc accepts -g configure:4167: cc -c -g -DpgiFortran conftest.c >&5 configure:4174: $? = 0 configure:4275: result: yes configure:4292: checking for cc option to accept ISO C89 configure:4366: cc -c -m32 -DpgiFortran conftest.c >&5 configure:4373: $? = 0 configure:4396: result: none needed configure:4425: checking for style of include used by make configure:4453: result: GNU configure:4478: checking dependency style of cc configure:4569: result: gcc3 configure:4588: checking whether cc understands -c and -o together configure:4620: cc -c conftest.c -o conftest2.o >&5 configure:4624: $? = 0 configure:4630: cc -c conftest.c -o conftest2.o >&5 configure:4634: $? = 0 configure:4689: result: yes configure:4716: checking for an ANSI C-conforming const configure:4791: cc -c -m32 -DpgiFortran conftest.c >&5 configure:4798: $? = 0 configure:4813: result: yes configure:4844: finding Fortran compiler (will not be used if Fortran API is not desired) configure:5240: checking for Fortran compiler version configure:5248: pgf95 --version >&5 pgf95-Error-Unknown switch: --version configure:5252: $? = 1 configure:5259: pgf95 -v >&5 pgf95-Warning-No files to process configure:5263: $? = 0 configure:5270: pgf95 -V >&5 pgf95 7.0-7 64-bit target on x86-64 Linux Copyright 1989-2000, The Portland Group, Inc. All Rights Reserved. Copyright 2000-2007, STMicroelectronics, Inc. All Rights Reserved. configure:5274: $? = 0 configure:5282: checking whether we are using the GNU Fortran compiler configure:5301: pgf95 -c conftest.F >&5 PGF90-S-0034-Syntax error at or near end of line (conftest.F: 3) 0 inform, 0 warnings, 1 severes, 0 fatal for main configure:5308: $? = 2 configure: failed program was: | program main | #ifndef __GNUC__ | choke me | #endif | | end configure:5325: result: no configure:5331: checking whether pgf95 accepts -g configure:5348: pgf95 -c -g conftest.f >&5 configure:5355: $? = 0 configure:5371: result: yes configure:5521: checking for Fortran 77 compiler version configure:5529: pgf95 --version >&5 pgf95-Error-Unknown switch: --version configure:5533: $? = 1 configure:5540: pgf95 -v >&5 pgf95-Warning-No files to process configure:5544: $? = 0 configure:5551: pgf95 -V >&5 pgf95 7.0-7 64-bit target on x86-64 Linux Copyright 1989-2000, The Portland Group, Inc. All Rights Reserved. Copyright 2000-2007, STMicroelectronics, Inc. All Rights Reserved. configure:5555: $? = 0 configure:5563: checking whether we are using the GNU Fortran 77 compiler configure:5582: pgf95 -c -Bstatic conftest.F >&5 conftest.F: PGF90-S-0034-Syntax error at or near end of line (conftest.F: 3) 0 inform, 0 warnings, 1 severes, 0 fatal for main configure:5589: $? = 2 configure: failed program was: | program main | #ifndef __GNUC__ | choke me | #endif | | end configure:5606: result: no configure:5612: checking whether pgf95 accepts -g configure:5629: pgf95 -c -g conftest.f >&5 configure:5636: $? = 0 configure:5652: result: yes configure:5700: setting up Fortran 90 configure:5719: checking for Fortran flag to compile .f90 files configure:5741: pgf95 -c conftest.f90 >&5 configure:5748: $? = 0 configure:5767: result: none configure:5797: checking fortran 90 modules inclusion flag configure:5828: pgf95 -c conftest.f90 >&5 configure:5835: $? = 0 configure:5868: pgf95 -c -Itmpdir_0 conftest.f90 >&5 configure:5875: $? = 0 configure:5906: result: -I configure:5918: checking if Fortran compiler can handle Fortran-90 configure:5926: pgf95 -Bstatic conftest.f90 conftest.f90: configure:5929: $? = 0 configure:5943: result: yes configure:5952: finding C++ compiler (will not be used if C++ API is not desired) configure:6019: checking for cl configure:6049: result: no configure:6019: checking for KCC configure:6049: result: no configure:6019: checking for CC configure:6049: result: no configure:6019: checking for cxx configure:6049: result: no configure:6019: checking for cc++ configure:6049: result: no configure:6019: checking for xlC configure:6049: result: no configure:6019: checking for aCC configure:6049: result: no configure:6019: checking for c++ configure:6035: found /usr/local/bin/c++ configure:6046: result: c++ configure:6077: checking for C++ compiler version configure:6085: c++ --version >&5 c++ (GCC) 4.1.0 Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:6089: $? = 0 configure:6096: c++ -v >&5 Using built-in specs. Target: x86_64-unknown-linux-gnu Configured with: ../gcc-4.1.0/configure --enable-languages=c,c++,fortran Thread model: posix gcc version 4.1.0 configure:6100: $? = 0 configure:6107: c++ -V >&5 c++: '-V' option must have argument configure:6111: $? = 1 configure:6114: checking whether we are using the GNU C++ compiler configure:6143: c++ -c -m32 -DpgiFortran conftest.cpp >&5 configure:6150: $? = 0 configure:6167: result: yes configure:6176: checking whether c++ accepts -g configure:6206: c++ -c -g -DpgiFortran conftest.cpp >&5 configure:6213: $? = 0 configure:6314: result: yes configure:6339: checking dependency style of c++ configure:6430: result: gcc3 configure:6503: setting up libtool configure:6531: checking for a sed that does not truncate output configure:6597: result: /bin/sed configure:6615: checking for grep that handles long lines and -e configure:6675: result: /bin/grep configure:6680: checking for egrep configure:6744: result: /bin/grep -E configure:6749: checking for fgrep configure:6813: result: /bin/grep -F configure:6848: checking for ld used by cc configure:6915: result: /usr/bin/ld configure:6924: checking if the linker (/usr/bin/ld) is GNU ld configure:6939: result: yes configure:6951: checking for BSD- or MS-compatible name lister (nm) configure:7000: result: /usr/bin/nm -B configure:7122: checking the name lister (/usr/bin/nm -B) interface configure:7129: cc -c -m32 -DpgiFortran conftest.c >&5 configure:7132: /usr/bin/nm -B "conftest.o" configure:7135: output 0000000000000000 B some_variable configure:7142: result: BSD nm configure:7145: checking whether ln -s works configure:7149: result: yes configure:7157: checking the maximum length of command line arguments configure:7277: result: 98304 configure:7294: checking whether the shell understands some XSI constructs configure:7302: result: yes configure:7306: checking whether the shell understands "+=" configure:7312: result: yes configure:7347: checking for /usr/bin/ld option to reload object files configure:7354: result: -r configure:7381: checking how to recognize dependent libraries configure:7571: result: pass_all configure:7631: checking for ar configure:7647: found /usr/bin/ar configure:7658: result: ar configure:7740: checking for strip configure:7756: found /usr/bin/strip configure:7767: result: strip configure:7843: checking for ranlib configure:7859: found /usr/bin/ranlib configure:7870: result: ranlib configure:7964: checking command to parse /usr/bin/nm -B output from cc object configure:8082: cc -c -m32 -DpgiFortran conftest.c >&5 configure:8085: $? = 0 configure:8089: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm configure:8092: $? = 0 configure:8146: cc -o conftest -m32 -DpgiFortran conftest.c conftstm.o >&5 configure:8149: $? = 0 configure:8187: result: ok configure:8282: cc -c -m32 -DpgiFortran conftest.c >&5 configure:8285: $? = 0 configure:8770: checking how to run the C preprocessor configure:8810: cc -E -DpgiFortran conftest.c configure:8817: $? = 0 configure:8848: cc -E -DpgiFortran conftest.c conftest.c:15:28: error: ac_nonexistent.h: No such file or directory configure:8855: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0-snapshot2008070100" | #define PACKAGE_STRING "netCDF 4.0-snapshot2008070100" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE "netcdf" | #define VERSION "4.0-snapshot2008070100" | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | /* end confdefs.h. */ | #include configure:8888: result: cc -E configure:8917: cc -E -DpgiFortran conftest.c configure:8924: $? = 0 configure:8955: cc -E -DpgiFortran conftest.c conftest.c:15:28: error: ac_nonexistent.h: No such file or directory configure:8962: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0-snapshot2008070100" | #define PACKAGE_STRING "netCDF 4.0-snapshot2008070100" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE "netcdf" | #define VERSION "4.0-snapshot2008070100" | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | /* end confdefs.h. */ | #include configure:9000: checking for ANSI C header files configure:9030: cc -c -m32 -DpgiFortran conftest.c >&5 configure:9037: $? = 0 configure:9136: cc -o conftest -m32 -DpgiFortran conftest.c >&5 configure:9140: $? = 0 configure:9146: ./conftest configure:9150: $? = 0 configure:9168: result: yes configure:9192: checking for sys/types.h configure:9213: cc -c -m32 -DpgiFortran conftest.c >&5 configure:9220: $? = 0 configure:9237: result: yes configure:9192: checking for sys/stat.h configure:9213: cc -c -m32 -DpgiFortran conftest.c >&5 configure:9220: $? = 0 configure:9237: result: yes configure:9192: checking for stdlib.h configure:9213: cc -c -m32 -DpgiFortran conftest.c >&5 configure:9220: $? = 0 configure:9237: result: yes configure:9192: checking for string.h configure:9213: cc -c -m32 -DpgiFortran conftest.c >&5 configure:9220: $? = 0 configure:9237: result: yes configure:9192: checking for memory.h configure:9213: cc -c -m32 -DpgiFortran conftest.c >&5 configure:9220: $? = 0 configure:9237: result: yes configure:9192: checking for strings.h configure:9213: cc -c -m32 -DpgiFortran conftest.c >&5 configure:9220: $? = 0 configure:9237: result: yes configure:9192: checking for inttypes.h configure:9213: cc -c -m32 -DpgiFortran conftest.c >&5 configure:9220: $? = 0 configure:9237: result: yes configure:9192: checking for stdint.h configure:9213: cc -c -m32 -DpgiFortran conftest.c >&5 configure:9220: $? = 0 configure:9237: result: yes configure:9192: checking for unistd.h configure:9213: cc -c -m32 -DpgiFortran conftest.c >&5 configure:9220: $? = 0 configure:9237: result: yes configure:9254: checking for dlfcn.h configure:9275: cc -c -m32 -DpgiFortran conftest.c >&5 configure:9282: $? = 0 configure:9299: result: yes configure:9429: checking for C++ compiler version configure:9437: c++ --version >&5 c++ (GCC) 4.1.0 Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:9441: $? = 0 configure:9448: c++ -v >&5 Using built-in specs. Target: x86_64-unknown-linux-gnu Configured with: ../gcc-4.1.0/configure --enable-languages=c,c++,fortran Thread model: posix gcc version 4.1.0 configure:9452: $? = 0 configure:9459: c++ -V >&5 c++: '-V' option must have argument configure:9463: $? = 1 configure:9466: checking whether we are using the GNU C++ compiler configure:9519: result: yes configure:9528: checking whether c++ accepts -g configure:9666: result: yes configure:9691: checking dependency style of c++ configure:9782: result: gcc3 configure:9805: checking how to run the C++ preprocessor configure:9841: c++ -E -DpgiFortran conftest.cpp configure:9848: $? = 0 configure:9879: c++ -E -DpgiFortran conftest.cpp conftest.cpp:26:28: error: ac_nonexistent.h: No such file or directory configure:9886: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0-snapshot2008070100" | #define PACKAGE_STRING "netCDF 4.0-snapshot2008070100" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE "netcdf" | #define VERSION "4.0-snapshot2008070100" | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | #include configure:9919: result: c++ -E configure:9948: c++ -E -DpgiFortran conftest.cpp configure:9955: $? = 0 configure:9986: c++ -E -DpgiFortran conftest.cpp conftest.cpp:26:28: error: ac_nonexistent.h: No such file or directory configure:9993: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0-snapshot2008070100" | #define PACKAGE_STRING "netCDF 4.0-snapshot2008070100" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE "netcdf" | #define VERSION "4.0-snapshot2008070100" | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | #include configure:10144: checking for Fortran 77 compiler version configure:10152: pgf95 --version >&5 pgf95-Error-Unknown switch: --version configure:10156: $? = 1 configure:10163: pgf95 -v >&5 pgf95-Warning-No files to process configure:10167: $? = 0 configure:10174: pgf95 -V >&5 pgf95 7.0-7 64-bit target on x86-64 Linux Copyright 1989-2000, The Portland Group, Inc. All Rights Reserved. Copyright 2000-2007, STMicroelectronics, Inc. All Rights Reserved. configure:10178: $? = 0 configure:10186: checking whether we are using the GNU Fortran 77 compiler configure:10229: result: no configure:10235: checking whether pgf95 accepts -g configure:10275: result: yes configure:10422: checking for Fortran compiler version configure:10430: pgf95 --version >&5 pgf95-Error-Unknown switch: --version configure:10434: $? = 1 configure:10441: pgf95 -v >&5 pgf95-Warning-No files to process configure:10445: $? = 0 configure:10452: pgf95 -V >&5 pgf95 7.0-7 64-bit target on x86-64 Linux Copyright 1989-2000, The Portland Group, Inc. All Rights Reserved. Copyright 2000-2007, STMicroelectronics, Inc. All Rights Reserved. configure:10456: $? = 0 configure:10464: checking whether we are using the GNU Fortran compiler configure:10507: result: no configure:10513: checking whether pgf95 accepts -g configure:10553: result: yes configure:11035: checking for objdir configure:11050: result: .libs configure:11342: checking if cc supports -fno-rtti -fno-exceptions configure:11360: cc -c -m32 -DpgiFortran -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C configure:11364: $? = 0 configure:11377: result: no configure:11397: checking for cc option to produce PIC configure:11654: result: -fPIC -DPIC configure:11666: checking if cc PIC flag -fPIC -DPIC works configure:11684: cc -c -m32 -DpgiFortran -fPIC -DPIC -DPIC conftest.c >&5 configure:11688: $? = 0 configure:11701: result: yes configure:11725: checking if cc static flag -static works configure:11753: result: yes configure:11768: checking if cc supports -c -o file.o configure:11789: cc -c -m32 -DpgiFortran -o out/conftest2.o conftest.c >&5 configure:11793: $? = 0 configure:11815: result: yes configure:11823: checking if cc supports -c -o file.o configure:11870: result: yes configure:11903: checking whether the cc linker (/usr/bin/ld -m elf_i386) supports shared libraries configure:12969: result: yes configure:13208: checking dynamic linker characteristics configure:13651: cc -o conftest -m32 -DpgiFortran -Wl,-rpath -Wl,/foo conftest.c >&5 configure:13658: $? = 0 configure:13891: result: GNU/Linux ld.so configure:13993: checking how to hardcode library paths into programs configure:14018: result: immediate configure:14859: checking whether stripping libraries is possible configure:14864: result: yes configure:14899: checking if libtool supports shared libraries configure:14901: result: yes configure:14904: checking whether to build shared libraries configure:14925: result: no configure:14928: checking whether to build static libraries configure:14932: result: yes configure:15082: checking for ld used by c++ configure:15149: result: /usr/bin/ld -m elf_i386 configure:15158: checking if the linker (/usr/bin/ld -m elf_i386) is GNU ld configure:15173: result: yes configure:15228: checking whether the c++ linker (/usr/bin/ld -m elf_i386) supports shared libraries configure:16198: result: yes configure:16226: c++ -c -m32 -DpgiFortran conftest.cpp >&5 configure:16229: $? = 0 configure:16411: checking for c++ option to produce PIC configure:16720: result: -fPIC -DPIC configure:16729: checking if c++ PIC flag -fPIC -DPIC works configure:16747: c++ -c -m32 -DpgiFortran -fPIC -DPIC -DPIC conftest.cpp >&5 configure:16751: $? = 0 configure:16764: result: yes configure:16785: checking if c++ static flag -static works configure:16813: result: no configure:16825: checking if c++ supports -c -o file.o configure:16846: c++ -c -m32 -DpgiFortran -o out/conftest2.o conftest.cpp >&5 configure:16850: $? = 0 configure:16872: result: yes configure:16877: checking if c++ supports -c -o file.o configure:16924: result: yes configure:16954: checking whether the c++ linker (/usr/bin/ld -m elf_i386) supports shared libraries configure:16980: result: yes configure:17117: checking dynamic linker characteristics configure:17508: c++ -o conftest -m32 -DpgiFortran -Wl,-rpath -Wl,/foo conftest.cpp >&5 /usr/bin/ld: cannot find -lstdc++ collect2: ld returned 1 exit status configure:17515: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0-snapshot2008070100" | #define PACKAGE_STRING "netCDF 4.0-snapshot2008070100" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE "netcdf" | #define VERSION "4.0-snapshot2008070100" | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:17748: result: GNU/Linux ld.so configure:17799: checking how to hardcode library paths into programs configure:17824: result: immediate configure:17965: checking if libtool supports shared libraries configure:17967: result: yes configure:17970: checking whether to build shared libraries configure:17990: result: no configure:17993: checking whether to build static libraries configure:17997: result: yes configure:18011: checking for pgf95 option to produce PIC configure:18268: result: -fpic configure:18277: checking if pgf95 PIC flag -fpic works configure:18295: pgf95 -c -Bstatic -fpic conftest.f >&5 conftest.f: configure:18299: $? = 0 configure:18312: result: yes configure:18333: checking if pgf95 static flag -Bstatic works conftest.f: configure:18361: result: yes configure:18373: checking if pgf95 supports -c -o file.o configure:18394: pgf95 -c -Bstatic -o out/conftest2.o conftest.f >&5 conftest.f: configure:18398: $? = 0 configure:18420: result: yes configure:18425: checking if pgf95 supports -c -o file.o configure:18472: result: yes configure:18502: checking whether the pgf95 linker (/usr/bin/ld -m elf_i386) supports shared libraries configure:19548: result: yes configure:19685: checking dynamic linker characteristics configure:20066: pgf95 -o conftest -Bstatic -Wl,-rpath -Wl,/foo conftest.f >&5 conftest.f: configure:20073: $? = 0 configure:20306: result: GNU/Linux ld.so configure:20357: checking how to hardcode library paths into programs configure:20382: result: immediate configure:20518: checking if libtool supports shared libraries configure:20520: result: yes configure:20523: checking whether to build shared libraries configure:20543: result: no configure:20546: checking whether to build static libraries configure:20550: result: yes configure:20576: pgf95 -c conftest.f90 >&5 configure:20579: $? = 0 configure:20689: checking for pgf95 option to produce PIC configure:20946: result: -fpic configure:20955: checking if pgf95 PIC flag -fpic works configure:20973: pgf95 -c -fpic conftest.f90 >&5 configure:20977: $? = 0 configure:20990: result: yes configure:21011: checking if pgf95 static flag -Bstatic works conftest.f90: configure:21039: result: no configure:21051: checking if pgf95 supports -c -o file.o configure:21072: pgf95 -c -o out/conftest2.o conftest.f90 >&5 configure:21076: $? = 0 configure:21098: result: yes configure:21103: checking if pgf95 supports -c -o file.o configure:21150: result: yes configure:21180: checking whether the pgf95 linker (/usr/bin/ld -m elf_i386) supports shared libraries configure:22226: result: yes configure:22363: checking dynamic linker characteristics configure:22744: pgf95 -o conftest -Wl,-rpath -Wl,/foo conftest.f90 >&5 conftest.f90: configure:22751: $? = 0 configure:22984: result: GNU/Linux ld.so configure:23035: checking how to hardcode library paths into programs configure:23060: result: immediate configure:23108: finding other utilities configure:23125: checking for a BSD-compatible install configure:23193: result: /usr/bin/install -c configure:23206: trying to set fortran flags for this platform configure:23259: trying to set flags for this platform configure:23264: checking if _HPUX_SOURCE should be set configure:23280: result: no configure:23285: checking if Solaris -Xa option is needed configure:23298: result: CFLAGS=-m32 configure:23303: trying to set fortran 90 flags for this platform configure:23306: checking if we need to add to FFLAGS for ifort compiler configure:23314: result: FFLAGS=-Bstatic configure:23324: checking if we need to set _LARGE_FILES despite results of previous tests configure:23355: result: _LARGE_FILES= configure:23365: checking for special C compiler options needed for large files configure:23460: result: no configure:23466: checking for _FILE_OFFSET_BITS value needed for large files configure:23501: cc -c -m32 -DpgiFortran conftest.c >&5 conftest.c:33: warning: left shift count >= width of type conftest.c:33: warning: left shift count >= width of type conftest.c:35: error: size of array 'off_t_is_large' is negative configure:23508: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0-snapshot2008070100" | #define PACKAGE_STRING "netCDF 4.0-snapshot2008070100" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE "netcdf" | #define VERSION "4.0-snapshot2008070100" | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include | /* Check that off_t can represent 2**63 - 1 correctly. | We can't simply define LARGE_OFF_T to be 9223372036854775807, | since some C++ compilers masquerading as C compilers | incorrectly reject 9223372036854775807. */ | #define LARGE_OFF_T (((off_t) 1 << 62) - 1 + ((off_t) 1 << 62)) | int off_t_is_large[(LARGE_OFF_T % 2147483629 == 721 | && LARGE_OFF_T % 2147483647 == 1) | ? 1 : -1]; | int | main () | { | | ; | return 0; | } configure:23552: cc -c -m32 -DpgiFortran conftest.c >&5 configure:23559: $? = 0 configure:23577: result: 64 configure:23715: displaying some results configure:23721: checking CPPFLAGS configure:23723: result: -DpgiFortran configure:23725: checking CC CFLAGS configure:23727: result: cc -m32 configure:23730: checking type cc configure:23732: result: cc is /usr/bin/cc configure:23735: checking CXX configure:23738: result: c++ configure:23740: checking CXXFLAGS configure:23742: result: -m32 configure:23745: checking type c++ configure:23747: result: c++ is /usr/local/bin/c++ configure:23754: checking FC configure:23757: result: pgf95 configure:23759: checking FFLAGS configure:23761: result: -Bstatic configure:23764: checking type pgf95 configure:23766: result: pgf95 is /opt/pgi/linux86-64/7.0-7/bin/pgf95 configure:23773: checking F90 configure:23776: result: pgf95 configure:23778: checking F90FLAGS configure:23780: result: -Bstatic configure:23783: checking type pgf95 configure:23785: result: pgf95 is /opt/pgi/linux86-64/7.0-7/bin/pgf95 configure:23792: checking AR configure:23795: result: ar configure:23797: checking AR_FLAGS configure:23799: result: cru configure:23802: checking type ar configure:23804: result: ar is /usr/bin/ar configure:23811: checking NM configure:23814: result: /usr/bin/nm -B configure:23816: checking NMFLAGS configure:23818: result: configure:23890: checking for /usr/bin/nm configure:23917: result: /usr/bin/nm -B configure:23930: checking nm flags configure:23935: result: configure:23947: checking for C-equivalent to Fortran routine "SUB" configure:23954: pgf95 -c -Bstatic conftest.f conftest.f: configure:23957: $? = 0 configure:23969: result: sub_ configure:23991: checking for Fortran "byte" configure:23999: pgf95 -c -Bstatic conftest.f conftest.f: configure:24002: $? = 0 configure:24004: result: yes configure:24022: checking for Fortran "integer*2" configure:24030: pgf95 -c -Bstatic conftest.f conftest.f: configure:24033: $? = 0 configure:24035: result: yes configure:24062: checking if Fortran "byte" is C "signed char" configure:24072: cc -c -DpgiFortran -m32 conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:24075: $? = 0 configure:24078: pgf95 -Bstatic -c conftestf.f conftestf.f: configure:24081: $? = 0 configure:24084: pgf95 -o conftest -Bstatic conftestf.o conftest.o /usr/bin/ld: warning: i386 architecture of input file `conftest.o' is incompatible with i386:x86-64 output configure:24087: $? = 0 configure:24090: ./conftest ./configure: line 24091: 25083 Segmentation fault ./conftest configure:24093: $? = 139 configure:24106: result: no configure:24135: checking if Fortran "byte" is C "short" configure:24145: cc -c -DpgiFortran -m32 conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:24148: $? = 0 configure:24151: pgf95 -Bstatic -c conftestf.f conftestf.f: configure:24154: $? = 0 configure:24157: pgf95 -o conftest -Bstatic conftestf.o conftest.o /usr/bin/ld: warning: i386 architecture of input file `conftest.o' is incompatible with i386:x86-64 output configure:24160: $? = 0 configure:24163: ./conftest ./configure: line 24164: 25108 Segmentation fault ./conftest configure:24166: $? = 139 configure:24179: result: no configure:24208: checking if Fortran "byte" is C "int" configure:24218: cc -c -DpgiFortran -m32 conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:24221: $? = 0 configure:24224: pgf95 -Bstatic -c conftestf.f conftestf.f: configure:24227: $? = 0 configure:24230: pgf95 -o conftest -Bstatic conftestf.o conftest.o /usr/bin/ld: warning: i386 architecture of input file `conftest.o' is incompatible with i386:x86-64 output configure:24233: $? = 0 configure:24236: ./conftest ./configure: line 24237: 25133 Segmentation fault ./conftest configure:24239: $? = 139 configure:24252: result: no configure:24281: checking if Fortran "byte" is C "long" configure:24291: cc -c -DpgiFortran -m32 conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:24294: $? = 0 configure:24297: pgf95 -Bstatic -c conftestf.f conftestf.f: configure:24300: $? = 0 configure:24303: pgf95 -o conftest -Bstatic conftestf.o conftest.o /usr/bin/ld: warning: i386 architecture of input file `conftest.o' is incompatible with i386:x86-64 output configure:24306: $? = 0 configure:24309: ./conftest ./configure: line 24310: 25158 Segmentation fault ./conftest configure:24312: $? = 139 configure:24325: result: no configure:24358: checking if Fortran "integer*2" is C "short" configure:24368: cc -c -DpgiFortran -m32 conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:24371: $? = 0 configure:24374: pgf95 -Bstatic -c conftestf.f conftestf.f: configure:24377: $? = 0 configure:24380: pgf95 -o conftest -Bstatic conftestf.o conftest.o /usr/bin/ld: warning: i386 architecture of input file `conftest.o' is incompatible with i386:x86-64 output configure:24383: $? = 0 configure:24386: ./conftest ./configure: line 24387: 25183 Segmentation fault ./conftest configure:24389: $? = 139 configure:24402: result: no configure:24431: checking if Fortran "integer*2" is C "int" configure:24441: cc -c -DpgiFortran -m32 conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:24444: $? = 0 configure:24447: pgf95 -Bstatic -c conftestf.f conftestf.f: configure:24450: $? = 0 configure:24453: pgf95 -o conftest -Bstatic conftestf.o conftest.o /usr/bin/ld: warning: i386 architecture of input file `conftest.o' is incompatible with i386:x86-64 output configure:24456: $? = 0 configure:24459: ./conftest ./configure: line 24460: 25208 Segmentation fault ./conftest configure:24462: $? = 139 configure:24475: result: no configure:24504: checking if Fortran "integer*2" is C "long" configure:24514: cc -c -DpgiFortran -m32 conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:24517: $? = 0 configure:24520: pgf95 -Bstatic -c conftestf.f conftestf.f: configure:24523: $? = 0 configure:24526: pgf95 -o conftest -Bstatic conftestf.o conftest.o /usr/bin/ld: warning: i386 architecture of input file `conftest.o' is incompatible with i386:x86-64 output configure:24529: $? = 0 configure:24532: ./conftest ./configure: line 24533: 25233 Segmentation fault ./conftest configure:24535: $? = 139 configure:24548: result: no configure:24579: checking if Fortran "integer" is C "int" configure:24589: cc -c -DpgiFortran -m32 conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:24592: $? = 0 configure:24595: pgf95 -Bstatic -c conftestf.f conftestf.f: configure:24598: $? = 0 configure:24601: pgf95 -o conftest -Bstatic conftestf.o conftest.o /usr/bin/ld: warning: i386 architecture of input file `conftest.o' is incompatible with i386:x86-64 output configure:24604: $? = 0 configure:24607: ./conftest ./configure: line 24608: 25258 Segmentation fault ./conftest configure:24610: $? = 139 configure:24623: result: no configure:24579: checking if Fortran "integer" is C "long" configure:24589: cc -c -DpgiFortran -m32 conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:24592: $? = 0 configure:24595: pgf95 -Bstatic -c conftestf.f conftestf.f: configure:24598: $? = 0 configure:24601: pgf95 -o conftest -Bstatic conftestf.o conftest.o /usr/bin/ld: warning: i386 architecture of input file `conftest.o' is incompatible with i386:x86-64 output configure:24604: $? = 0 configure:24607: ./conftest ./configure: line 24608: 25281 Segmentation fault ./conftest configure:24610: $? = 139 configure:24623: result: no configure:24652: checking if Fortran "real" is C "float" configure:24662: cc -c -DpgiFortran -m32 conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:24665: $? = 0 configure:24668: pgf95 -Bstatic -c conftestf.f conftestf.f: configure:24671: $? = 0 configure:24674: pgf95 -o conftest -Bstatic conftestf.o conftest.o /usr/bin/ld: warning: i386 architecture of input file `conftest.o' is incompatible with i386:x86-64 output configure:24677: $? = 0 configure:24680: ./conftest ./configure: line 24681: 25306 Segmentation fault ./conftest configure:24683: $? = 139 configure:24696: result: no configure:24652: checking if Fortran "real" is C "double" configure:24662: cc -c -DpgiFortran -m32 conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:24665: $? = 0 configure:24668: pgf95 -Bstatic -c conftestf.f conftestf.f: configure:24671: $? = 0 configure:24674: pgf95 -o conftest -Bstatic conftestf.o conftest.o /usr/bin/ld: warning: i386 architecture of input file `conftest.o' is incompatible with i386:x86-64 output configure:24677: $? = 0 configure:24680: ./conftest ./configure: line 24681: 25329 Segmentation fault ./conftest configure:24683: $? = 139 configure:24696: result: no configure:24725: checking if Fortran "doubleprecision" is C "double" configure:24735: cc -c -DpgiFortran -m32 conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:24738: $? = 0 configure:24741: pgf95 -Bstatic -c conftestf.f conftestf.f: configure:24744: $? = 0 configure:24747: pgf95 -o conftest -Bstatic conftestf.o conftest.o /usr/bin/ld: warning: i386 architecture of input file `conftest.o' is incompatible with i386:x86-64 output configure:24750: $? = 0 configure:24753: ./conftest ./configure: line 24754: 25354 Segmentation fault ./conftest configure:24756: $? = 139 configure:24769: result: no configure:24725: checking if Fortran "doubleprecision" is C "float" configure:24735: cc -c -DpgiFortran -m32 conftest.c conftest.c: In function 'sub_': conftest.c:4: warning: incompatible implicit declaration of built-in function 'exit' configure:24738: $? = 0 configure:24741: pgf95 -Bstatic -c conftestf.f conftestf.f: configure:24744: $? = 0 configure:24747: pgf95 -o conftest -Bstatic conftestf.o conftest.o /usr/bin/ld: warning: i386 architecture of input file `conftest.o' is incompatible with i386:x86-64 output configure:24750: $? = 0 configure:24753: ./conftest ./configure: line 24754: 25377 Segmentation fault ./conftest configure:24756: $? = 139 configure:24769: result: no configure:24792: checking for Fortran-equivalent to netCDF "byte" configure:24800: pgf95 -c -Bstatic conftest.f conftest.f: configure:24803: $? = 0 configure:24814: result: byte configure:24820: checking for Fortran-equivalent to netCDF "short" configure:24828: pgf95 -c -Bstatic conftest.f conftest.f: configure:24831: $? = 0 configure:24842: result: integer*2 configure:24909: checking if Fortran 90 compiler capitalizes .mod filenames configure:24916: pgf95 -Bstatic conftest.f90 >&5 conftest.f90: /usr/local/pgi/linux86-64/7.0-7/lib/f90main.o: In function `main': f90main.c:(.text+0x3c): undefined reference to `MAIN_' configure:24919: $? = 2 configure:24927: result: no configure:24948: checking types, headers, and functions configure:24952: checking for stdlib.h configure:24957: result: yes configure:25095: checking for sys/types.h configure:25100: result: yes configure:25239: checking for stdbool.h that conforms to C99 configure:25334: cc -c -m32 -DpgiFortran conftest.c >&5 configure:25341: $? = 0 configure:25356: result: yes configure:25358: checking for _Bool configure:25386: cc -c -m32 -DpgiFortran conftest.c >&5 configure:25393: $? = 0 configure:25420: cc -c -m32 -DpgiFortran conftest.c >&5 conftest.c: In function 'main': conftest.c:68: error: expected expression before ')' token configure:25427: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0-snapshot2008070100" | #define PACKAGE_STRING "netCDF 4.0-snapshot2008070100" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE "netcdf" | #define VERSION "4.0-snapshot2008070100" | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((_Bool))) | return 0; | ; | return 0; | } configure:25450: result: yes configure:25476: checking for strlcat configure:25532: cc -o conftest -m32 -DpgiFortran conftest.c >&5 /tmp/ccC2OPkm.o: In function `main': conftest.c:(.text+0x12): undefined reference to `strlcat' collect2: ld returned 1 exit status configure:25539: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0-snapshot2008070100" | #define PACKAGE_STRING "netCDF 4.0-snapshot2008070100" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE "netcdf" | #define VERSION "4.0-snapshot2008070100" | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | /* end confdefs.h. */ | /* Define strlcat to an innocuous variant, in case declares strlcat. | For example, HP-UX 11i declares gettimeofday. */ | #define strlcat innocuous_strlcat | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char strlcat (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef strlcat | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char strlcat (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_strlcat || defined __stub___strlcat | choke me | #endif | | int | main () | { | return strlcat (); | ; | return 0; | } configure:25561: result: no configure:25476: checking for strerror configure:25532: cc -o conftest -m32 -DpgiFortran conftest.c >&5 configure:25539: $? = 0 configure:25561: result: yes configure:25574: checking for working alloca.h configure:25601: cc -o conftest -m32 -DpgiFortran conftest.c >&5 configure:25608: $? = 0 configure:25628: result: yes configure:25638: checking for alloca configure:25685: cc -o conftest -m32 -DpgiFortran conftest.c >&5 configure:25692: $? = 0 configure:25712: result: yes configure:25948: checking whether isnan is declared configure:25978: cc -c -m32 -DpgiFortran conftest.c >&5 configure:25985: $? = 0 configure:26000: result: yes configure:26016: checking whether isinf is declared configure:26046: cc -c -m32 -DpgiFortran conftest.c >&5 configure:26053: $? = 0 configure:26068: result: yes configure:26084: checking whether isfinite is declared configure:26114: cc -c -m32 -DpgiFortran conftest.c >&5 conftest.c: In function 'main': conftest.c:45: error: 'isfinite' undeclared (first use in this function) conftest.c:45: error: (Each undeclared identifier is reported only once conftest.c:45: error: for each function it appears in.) configure:26121: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0-snapshot2008070100" | #define PACKAGE_STRING "netCDF 4.0-snapshot2008070100" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE "netcdf" | #define VERSION "4.0-snapshot2008070100" | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STRERROR 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISINF 1 | /* end confdefs.h. */ | #include | | int | main () | { | #ifndef isfinite | (void) isfinite; | #endif | | ; | return 0; | } configure:26136: result: no configure:26152: checking whether signbit is declared configure:26182: cc -c -m32 -DpgiFortran conftest.c >&5 conftest.c: In function 'main': conftest.c:46: error: 'signbit' undeclared (first use in this function) conftest.c:46: error: (Each undeclared identifier is reported only once conftest.c:46: error: for each function it appears in.) configure:26189: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0-snapshot2008070100" | #define PACKAGE_STRING "netCDF 4.0-snapshot2008070100" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE "netcdf" | #define VERSION "4.0-snapshot2008070100" | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STRERROR 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISFINITE 0 | /* end confdefs.h. */ | #include | | int | main () | { | #ifndef signbit | (void) signbit; | #endif | | ; | return 0; | } configure:26204: result: no configure:26228: checking for long long int configure:26275: cc -o conftest -m32 -DpgiFortran conftest.c >&5 configure:26282: $? = 0 configure:26329: cc -o conftest -m32 -DpgiFortran conftest.c >&5 configure:26333: $? = 0 configure:26339: ./conftest configure:26343: $? = 0 configure:26370: result: yes configure:26381: checking for unsigned long long int configure:26428: cc -o conftest -m32 -DpgiFortran conftest.c >&5 configure:26435: $? = 0 configure:26455: result: yes configure:26472: checking for struct stat.st_blksize configure:26500: cc -c -m32 -DpgiFortran conftest.c >&5 configure:26507: $? = 0 configure:26565: result: yes configure:26582: checking for IEEE floating point format configure:26630: cc -o conftest -m32 -DpgiFortran conftest.c >&5 configure:26634: $? = 0 configure:26640: ./conftest configure:26644: $? = 0 configure:26660: result: yes configure:26670: checking for size_t configure:26698: cc -c -m32 -DpgiFortran conftest.c >&5 configure:26705: $? = 0 configure:26732: cc -c -m32 -DpgiFortran conftest.c >&5 conftest.c: In function 'main': conftest.c:81: error: expected expression before ')' token configure:26739: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0-snapshot2008070100" | #define PACKAGE_STRING "netCDF 4.0-snapshot2008070100" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE "netcdf" | #define VERSION "4.0-snapshot2008070100" | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STRERROR 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISFINITE 0 | #define HAVE_DECL_SIGNBIT 0 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_ST_BLKSIZE 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((size_t))) | return 0; | ; | return 0; | } configure:26762: result: yes configure:26774: checking for off_t configure:26802: cc -c -m32 -DpgiFortran conftest.c >&5 configure:26809: $? = 0 configure:26836: cc -c -m32 -DpgiFortran conftest.c >&5 conftest.c: In function 'main': conftest.c:81: error: expected expression before ')' token configure:26843: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0-snapshot2008070100" | #define PACKAGE_STRING "netCDF 4.0-snapshot2008070100" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE "netcdf" | #define VERSION "4.0-snapshot2008070100" | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STRERROR 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISFINITE 0 | #define HAVE_DECL_SIGNBIT 0 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_ST_BLKSIZE 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((off_t))) | return 0; | ; | return 0; | } configure:26866: result: yes configure:26878: checking for ssize_t configure:26906: cc -c -m32 -DpgiFortran conftest.c >&5 configure:26913: $? = 0 configure:26940: cc -c -m32 -DpgiFortran conftest.c >&5 conftest.c: In function 'main': conftest.c:81: error: expected expression before ')' token configure:26947: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0-snapshot2008070100" | #define PACKAGE_STRING "netCDF 4.0-snapshot2008070100" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE "netcdf" | #define VERSION "4.0-snapshot2008070100" | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STRERROR 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISFINITE 0 | #define HAVE_DECL_SIGNBIT 0 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_ST_BLKSIZE 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((ssize_t))) | return 0; | ; | return 0; | } configure:26970: result: yes configure:26980: checking for ptrdiff_t configure:27008: cc -c -m32 -DpgiFortran conftest.c >&5 configure:27015: $? = 0 configure:27042: cc -c -m32 -DpgiFortran conftest.c >&5 conftest.c: In function 'main': conftest.c:82: error: expected expression before ')' token configure:27049: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0-snapshot2008070100" | #define PACKAGE_STRING "netCDF 4.0-snapshot2008070100" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE "netcdf" | #define VERSION "4.0-snapshot2008070100" | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STRERROR 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISFINITE 0 | #define HAVE_DECL_SIGNBIT 0 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_ST_BLKSIZE 1 | #define HAVE_SSIZE_T 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((ptrdiff_t))) | return 0; | ; | return 0; | } configure:27072: result: yes configure:27082: checking for uchar configure:27110: cc -c -m32 -DpgiFortran conftest.c >&5 conftest.c: In function 'main': conftest.c:83: error: 'uchar' undeclared (first use in this function) conftest.c:83: error: (Each undeclared identifier is reported only once conftest.c:83: error: for each function it appears in.) configure:27117: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0-snapshot2008070100" | #define PACKAGE_STRING "netCDF 4.0-snapshot2008070100" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE "netcdf" | #define VERSION "4.0-snapshot2008070100" | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STRERROR 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISFINITE 0 | #define HAVE_DECL_SIGNBIT 0 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_ST_BLKSIZE 1 | #define HAVE_SSIZE_T 1 | #define HAVE_PTRDIFF_T 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof (uchar)) | return 0; | ; | return 0; | } configure:27174: result: no configure:27189: checking whether char is unsigned configure:27217: cc -c -m32 -DpgiFortran conftest.c >&5 configure:27224: $? = 0 configure:27239: result: no configure:27249: checking whether byte ordering is bigendian configure:27274: cc -c -m32 -DpgiFortran conftest.c >&5 conftest.c:48: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'is' configure:27281: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0-snapshot2008070100" | #define PACKAGE_STRING "netCDF 4.0-snapshot2008070100" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE "netcdf" | #define VERSION "4.0-snapshot2008070100" | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STRERROR 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISFINITE 0 | #define HAVE_DECL_SIGNBIT 0 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_ST_BLKSIZE 1 | #define HAVE_SSIZE_T 1 | #define HAVE_PTRDIFF_T 1 | /* end confdefs.h. */ | #if ! (defined __BIG_ENDIAN__ || defined __LITTLE_ENDIAN__) | neither is defined; | #endif | typedef int dummy; | configure:27325: cc -c -m32 -DpgiFortran conftest.c >&5 configure:27332: $? = 0 configure:27364: cc -c -m32 -DpgiFortran conftest.c >&5 conftest.c: In function 'main': conftest.c:54: error: 'not' undeclared (first use in this function) conftest.c:54: error: (Each undeclared identifier is reported only once conftest.c:54: error: for each function it appears in.) conftest.c:54: error: expected ';' before 'big' configure:27371: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0-snapshot2008070100" | #define PACKAGE_STRING "netCDF 4.0-snapshot2008070100" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE "netcdf" | #define VERSION "4.0-snapshot2008070100" | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STRERROR 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISFINITE 0 | #define HAVE_DECL_SIGNBIT 0 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_ST_BLKSIZE 1 | #define HAVE_SSIZE_T 1 | #define HAVE_PTRDIFF_T 1 | /* end confdefs.h. */ | #include | #include | | int | main () | { | #if BYTE_ORDER != BIG_ENDIAN | not big endian | #endif | | ; | return 0; | } configure:27623: result: no configure:27647: checking size of short configure:27950: cc -o conftest -m32 -DpgiFortran conftest.c >&5 configure:27954: $? = 0 configure:27960: ./conftest configure:27964: $? = 0 configure:27988: result: 2 configure:28002: checking size of int configure:28305: cc -o conftest -m32 -DpgiFortran conftest.c >&5 configure:28309: $? = 0 configure:28315: ./conftest configure:28319: $? = 0 configure:28343: result: 4 configure:28357: checking size of long configure:28660: cc -o conftest -m32 -DpgiFortran conftest.c >&5 configure:28664: $? = 0 configure:28670: ./conftest configure:28674: $? = 0 configure:28698: result: 4 configure:28712: checking size of float configure:29015: cc -o conftest -m32 -DpgiFortran conftest.c >&5 configure:29019: $? = 0 configure:29025: ./conftest configure:29029: $? = 0 configure:29053: result: 4 configure:29067: checking size of double configure:29370: cc -o conftest -m32 -DpgiFortran conftest.c >&5 configure:29374: $? = 0 configure:29380: ./conftest configure:29384: $? = 0 configure:29408: result: 8 configure:29422: checking size of off_t configure:29725: cc -o conftest -m32 -DpgiFortran conftest.c >&5 configure:29729: $? = 0 configure:29735: ./conftest configure:29739: $? = 0 configure:29763: result: 8 configure:29777: checking size of size_t configure:30080: cc -o conftest -m32 -DpgiFortran conftest.c >&5 configure:30084: $? = 0 configure:30090: ./conftest configure:30094: $? = 0 configure:30118: result: 4 configure:30217: checking for manual-page index command configure:30219: result: configure:30230: checking what to call the output of the ftpbin target configure:30239: result: binary-netcdf-4.0-snapshot2008070100_pgf95_pgf95.tar pgf95 c++ configure:30242: checking binary distribution directory configure:30250: result: /home/ftp/pub/binary/linux_2.6-x86_64 configure:30291: checking hdf5.h usability configure:30308: cc -c -m32 -DpgiFortran -I/upc/share/ed/local/shecky32/include conftest.c >&5 configure:30315: $? = 0 configure:30329: result: yes configure:30333: checking hdf5.h presence configure:30348: cc -E -DpgiFortran -I/upc/share/ed/local/shecky32/include conftest.c configure:30355: $? = 0 configure:30369: result: yes configure:30402: checking for hdf5.h configure:30411: result: yes configure:30430: checking for H5Fflush in -lhdf5 configure:30465: cc -o conftest -m32 -DpgiFortran -I/upc/share/ed/local/shecky32/include -L/upc/share/ed/local/shecky32/lib -L/upc/share/ed/local/shecky32/lib conftest.c -lhdf5 -lm -lz -lhdf5 >&5 configure:30472: $? = 0 configure:30493: result: yes configure:30520: checking for H5DSis_scale in -lhdf5_hl configure:30555: cc -o conftest -m32 -DpgiFortran -I/upc/share/ed/local/shecky32/include -L/upc/share/ed/local/shecky32/lib -L/upc/share/ed/local/shecky32/lib conftest.c -lhdf5_hl -lhdf5 -lm -lz -lhdf5 >&5 configure:30562: $? = 0 configure:30583: result: yes configure:30603: checking for H5Pget_fapl_mpiposix in -lhdf5 configure:30638: cc -o conftest -m32 -DpgiFortran -I/upc/share/ed/local/shecky32/include -L/upc/share/ed/local/shecky32/lib -L/upc/share/ed/local/shecky32/lib conftest.c -lhdf5 -lhdf5_hl -lhdf5 -lm -lz -lhdf5 >&5 /tmp/ccGNTLsF.o: In function `main': conftest.c:(.text+0x12): undefined reference to `H5Pget_fapl_mpiposix' collect2: ld returned 1 exit status configure:30645: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0-snapshot2008070100" | #define PACKAGE_STRING "netCDF 4.0-snapshot2008070100" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE "netcdf" | #define VERSION "4.0-snapshot2008070100" | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STRERROR 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISFINITE 0 | #define HAVE_DECL_SIGNBIT 0 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_ST_BLKSIZE 1 | #define HAVE_SSIZE_T 1 | #define HAVE_PTRDIFF_T 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_SIZE_T 4 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_LIBHDF5_HL 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5Pget_fapl_mpiposix (); | int | main () | { | return H5Pget_fapl_mpiposix (); | ; | return 0; | } configure:30666: result: no configure:30681: checking for H5Pget_fapl_mpio in -lhdf5 configure:30716: cc -o conftest -m32 -DpgiFortran -I/upc/share/ed/local/shecky32/include -L/upc/share/ed/local/shecky32/lib -L/upc/share/ed/local/shecky32/lib conftest.c -lhdf5 -lhdf5_hl -lhdf5 -lm -lz -lhdf5 >&5 /tmp/cc8Vx4QR.o: In function `main': conftest.c:(.text+0x12): undefined reference to `H5Pget_fapl_mpio' collect2: ld returned 1 exit status configure:30723: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "netCDF" | #define PACKAGE_TARNAME "netcdf" | #define PACKAGE_VERSION "4.0-snapshot2008070100" | #define PACKAGE_STRING "netCDF 4.0-snapshot2008070100" | #define PACKAGE_BUGREPORT "support@unidata.ucar.edu" | #define PACKAGE "netcdf" | #define VERSION "4.0-snapshot2008070100" | #define USE_NETCDF4 1 | #define H5_USE_16_API 1 | #define USE_RENAMEV3 1 | #define USE_EXTREME_NUMBERS 1 | #define TEMP_LARGE "." | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define _FILE_OFFSET_BITS 64 | #define NF_INT1_T byte | #define NF_INT2_T integer*2 | #define NCBYTE_T byte | #define NCSHORT_T integer*2 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STRERROR 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ALLOCA 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_DECL_ISINF 1 | #define HAVE_DECL_ISFINITE 0 | #define HAVE_DECL_SIGNBIT 0 | #define HAVE_LONG_LONG_INT 1 | #define HAVE_UNSIGNED_LONG_LONG_INT 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_ST_BLKSIZE 1 | #define HAVE_SSIZE_T 1 | #define HAVE_PTRDIFF_T 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_OFF_T 8 | #define SIZEOF_SIZE_T 4 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_LIBHDF5_HL 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5Pget_fapl_mpio (); | int | main () | { | return H5Pget_fapl_mpio (); | ; | return 0; | } configure:30744: result: no configure:30776: checking whether parallel I/O features are to be included configure:30778: result: no configure:30782: checking for H5Pset_deflate in -lhdf5 configure:30817: cc -o conftest -m32 -DpgiFortran -I/upc/share/ed/local/shecky32/include -L/upc/share/ed/local/shecky32/lib -L/upc/share/ed/local/shecky32/lib conftest.c -lhdf5 -lhdf5_hl -lhdf5 -lm -lz -lhdf5 >&5 configure:30824: $? = 0 configure:30845: result: yes configure:30909: checking for gawk configure:30936: result: gawk configure:30951: checking for flex configure:30967: found /usr/bin/flex configure:30978: result: flex configure:31015: flex conftest.l configure:31019: $? = 0 configure:31021: checking lex output file root configure:31037: result: lex.yy configure:31042: checking lex library configure:31061: cc -o conftest -m32 -DpgiFortran conftest.c >&5 /tmp/ccwEk6bQ.o: In function `yylex': conftest.c:(.text+0x605): undefined reference to `yywrap' /tmp/ccwEk6bQ.o: In function `input': conftest.c:(.text+0xeac): undefined reference to `yywrap' /tmp/ccwEk6bQ.o: In function `main': conftest.c:(.text+0x1990): undefined reference to `yywrap' collect2: ld returned 1 exit status configure:31068: $? = 1 configure: failed program was: | | #line 3 "lex.yy.c" | | #define YY_INT_ALIGNED short int | | /* A lexical scanner generated by flex */ | | #define FLEX_SCANNER | #define YY_FLEX_MAJOR_VERSION 2 | #define YY_FLEX_MINOR_VERSION 5 | #define YY_FLEX_SUBMINOR_VERSION 33 | #if YY_FLEX_SUBMINOR_VERSION > 0 | #define FLEX_BETA | #endif | | /* First, we deal with platform-specific or compiler-specific issues. */ | | /* begin standard C headers. */ | #include | #include | #include | #include | | /* end standard C headers. */ | | /* flex integer type definitions */ | | #ifndef FLEXINT_H | #define FLEXINT_H | | /* C99 systems have . Non-C99 systems may or may not. */ | | #if __STDC_VERSION__ >= 199901L | | /* C99 says to define __STDC_LIMIT_MACROS before including stdint.h, | * if you want the limit (max/min) macros for int types. | */ | #ifndef __STDC_LIMIT_MACROS | #define __STDC_LIMIT_MACROS 1 | #endif | | #include | typedef int8_t flex_int8_t; | typedef uint8_t flex_uint8_t; | typedef int16_t flex_int16_t; | typedef uint16_t flex_uint16_t; | typedef int32_t flex_int32_t; | typedef uint32_t flex_uint32_t; | #else | typedef signed char flex_int8_t; | typedef short int flex_int16_t; | typedef int flex_int32_t; | typedef unsigned char flex_uint8_t; | typedef unsigned short int flex_uint16_t; | typedef unsigned int flex_uint32_t; | #endif /* ! C99 */ | | /* Limits of integral types. */ | #ifndef INT8_MIN | #define INT8_MIN (-128) | #endif | #ifndef INT16_MIN | #define INT16_MIN (-32767-1) | #endif | #ifndef INT32_MIN | #define INT32_MIN (-2147483647-1) | #endif | #ifndef INT8_MAX | #define INT8_MAX (127) | #endif | #ifndef INT16_MAX | #define INT16_MAX (32767) | #endif | #ifndef INT32_MAX | #define INT32_MAX (2147483647) | #endif | #ifndef UINT8_MAX | #define UINT8_MAX (255U) | #endif | #ifndef UINT16_MAX | #define UINT16_MAX (65535U) | #endif | #ifndef UINT32_MAX | #define UINT32_MAX (4294967295U) | #endif | | #endif /* ! FLEXINT_H */ | | #ifdef __cplusplus | | /* The "const" storage-class-modifier is valid. */ | #define YY_USE_CONST | | #else /* ! __cplusplus */ | | #if __STDC__ | | #define YY_USE_CONST | | #endif /* __STDC__ */ | #endif /* ! __cplusplus */ | | #ifdef YY_USE_CONST | #define yyconst const | #else | #define yyconst | #endif | | /* Returned upon end-of-file. */ | #define YY_NULL 0 | | /* Promotes a possibly negative, possibly signed char to an unsigned | * integer for use as an array index. If the signed char is negative, | * we want to instead treat it as an 8-bit unsigned char, hence the | * double cast. | */ | #define YY_SC_TO_UI(c) ((unsigned int) (unsigned char) c) | | /* Enter a start condition. This macro really ought to take a parameter, | * but we do it the disgusting crufty way forced on us by the ()-less | * definition of BEGIN. | */ | #define BEGIN (yy_start) = 1 + 2 * | | /* Translate the current start state into a value that can be later handed | * to BEGIN to return to the state. The YYSTATE alias is for lex | * compatibility. | */ | #define YY_START (((yy_start) - 1) / 2) | #define YYSTATE YY_START | | /* Action number for EOF rule of a given start state. */ | #define YY_STATE_EOF(state) (YY_END_OF_BUFFER + state + 1) | | /* Special action meaning "start processing a new file". */ | #define YY_NEW_FILE yyrestart(yyin ) | | #define YY_END_OF_BUFFER_CHAR 0 | | /* Size of default input buffer. */ | #ifndef YY_BUF_SIZE | #define YY_BUF_SIZE 16384 | #endif | | /* The state buf must be large enough to hold one state per character in the main buffer. | */ | #define YY_STATE_BUF_SIZE ((YY_BUF_SIZE + 2) * sizeof(yy_state_type)) | | #ifndef YY_TYPEDEF_YY_BUFFER_STATE | #define YY_TYPEDEF_YY_BUFFER_STATE | typedef struct yy_buffer_state *YY_BUFFER_STATE; | #endif | | extern int yyleng; | | extern FILE *yyin, *yyout; | | #define EOB_ACT_CONTINUE_SCAN 0 | #define EOB_ACT_END_OF_FILE 1 | #define EOB_ACT_LAST_MATCH 2 | | #define YY_LESS_LINENO(n) | | /* Return all but the first "n" matched characters back to the input stream. */ | #define yyless(n) \ | do \ | { \ | /* Undo effects of setting up yytext. */ \ | int yyless_macro_arg = (n); \ | YY_LESS_LINENO(yyless_macro_arg);\ | *yy_cp = (yy_hold_char); \ | YY_RESTORE_YY_MORE_OFFSET \ | (yy_c_buf_p) = yy_cp = yy_bp + yyless_macro_arg - YY_MORE_ADJ; \ | YY_DO_BEFORE_ACTION; /* set up yytext again */ \ | } \ | while ( 0 ) | | #define unput(c) yyunput( c, (yytext_ptr) ) | | /* The following is because we cannot portably get our hands on size_t | * (without autoconf's help, which isn't available because we want | * flex-generated scanners to compile on their own). | */ | | #ifndef YY_TYPEDEF_YY_SIZE_T | #define YY_TYPEDEF_YY_SIZE_T | typedef unsigned int yy_size_t; | #endif | | #ifndef YY_STRUCT_YY_BUFFER_STATE | #define YY_STRUCT_YY_BUFFER_STATE | struct yy_buffer_state | { | FILE *yy_input_file; | | char *yy_ch_buf; /* input buffer */ | char *yy_buf_pos; /* current position in input buffer */ | | /* Size of input buffer in bytes, not including room for EOB | * characters. | */ | yy_size_t yy_buf_size; | | /* Number of characters read into yy_ch_buf, not including EOB | * characters. | */ | int yy_n_chars; | | /* Whether we "own" the buffer - i.e., we know we created it, | * and can realloc() it to grow it, and should free() it to | * delete it. | */ | int yy_is_our_buffer; | | /* Whether this is an "interactive" input source; if so, and | * if we're using stdio for input, then we want to use getc() | * instead of fread(), to make sure we stop fetching input after | * each newline. | */ | int yy_is_interactive; | | /* Whether we're considered to be at the beginning of a line. | * If so, '^' rules will be active on the next match, otherwise | * not. | */ | int yy_at_bol; | | int yy_bs_lineno; /**< The line count. */ | int yy_bs_column; /**< The column count. */ | | /* Whether to try to fill the input buffer when we reach the | * end of it. | */ | int yy_fill_buffer; | | int yy_buffer_status; | | #define YY_BUFFER_NEW 0 | #define YY_BUFFER_NORMAL 1 | /* When an EOF's been seen but there's still some text to process | * then we mark the buffer as YY_EOF_PENDING, to indicate that we | * shouldn't try reading from the input source any more. We might | * still have a bunch of tokens to match, though, because of | * possible backing-up. | * | * When we actually see the EOF, we change the status to "new" | * (via yyrestart()), so that the user can continue scanning by | * just pointing yyin at a new input file. | */ | #define YY_BUFFER_EOF_PENDING 2 | | }; | #endif /* !YY_STRUCT_YY_BUFFER_STATE */ | | /* Stack of input buffers. */ | static size_t yy_buffer_stack_top = 0; /**< index of top of stack. */ | static size_t yy_buffer_stack_max = 0; /**< capacity of stack. */ | static YY_BUFFER_STATE * yy_buffer_stack = 0; /**< Stack as an array. */ | | /* We provide macros for accessing buffer states in case in the | * future we want to put the buffer states in a more general | * "scanner state". | * | * Returns the top of the stack, or NULL. | */ | #define YY_CURRENT_BUFFER ( (yy_buffer_stack) \ | ? (yy_buffer_stack)[(yy_buffer_stack_top)] \ | : NULL) | | /* Same as previous macro, but useful when we know that the buffer stack is not | * NULL or when we need an lvalue. For internal use only. | */ | #define YY_CURRENT_BUFFER_LVALUE (yy_buffer_stack)[(yy_buffer_stack_top)] | | /* yy_hold_char holds the character lost when yytext is formed. */ | static char yy_hold_char; | static int yy_n_chars; /* number of characters read into yy_ch_buf */ | int yyleng; | | /* Points to current character in buffer. */ | static char *yy_c_buf_p = (char *) 0; | static int yy_init = 0; /* whether we need to initialize */ | static int yy_start = 0; /* start state number */ | | /* Flag which is used to allow yywrap()'s to do buffer switches | * instead of setting up a fresh yyin. A bit of a hack ... | */ | static int yy_did_buffer_switch_on_eof; | | void yyrestart (FILE *input_file ); | void yy_switch_to_buffer (YY_BUFFER_STATE new_buffer ); | YY_BUFFER_STATE yy_create_buffer (FILE *file,int size ); | void yy_delete_buffer (YY_BUFFER_STATE b ); | void yy_flush_buffer (YY_BUFFER_STATE b ); | void yypush_buffer_state (YY_BUFFER_STATE new_buffer ); | void yypop_buffer_state (void ); | | static void yyensure_buffer_stack (void ); | static void yy_load_buffer_state (void ); | static void yy_init_buffer (YY_BUFFER_STATE b,FILE *file ); | | #define YY_FLUSH_BUFFER yy_flush_buffer(YY_CURRENT_BUFFER ) | | YY_BUFFER_STATE yy_scan_buffer (char *base,yy_size_t size ); | YY_BUFFER_STATE yy_scan_string (yyconst char *yy_str ); | YY_BUFFER_STATE yy_scan_bytes (yyconst char *bytes,int len ); | | void *yyalloc (yy_size_t ); | void *yyrealloc (void *,yy_size_t ); | void yyfree (void * ); | | #define yy_new_buffer yy_create_buffer | | #define yy_set_interactive(is_interactive) \ | { \ | if ( ! YY_CURRENT_BUFFER ){ \ | yyensure_buffer_stack (); \ | YY_CURRENT_BUFFER_LVALUE = \ | yy_create_buffer(yyin,YY_BUF_SIZE ); \ | } \ | YY_CURRENT_BUFFER_LVALUE->yy_is_interactive = is_interactive; \ | } | | #define yy_set_bol(at_bol) \ | { \ | if ( ! YY_CURRENT_BUFFER ){\ | yyensure_buffer_stack (); \ | YY_CURRENT_BUFFER_LVALUE = \ | yy_create_buffer(yyin,YY_BUF_SIZE ); \ | } \ | YY_CURRENT_BUFFER_LVALUE->yy_at_bol = at_bol; \ | } | | #define YY_AT_BOL() (YY_CURRENT_BUFFER_LVALUE->yy_at_bol) | | /* Begin user sect3 */ | | typedef unsigned char YY_CHAR; | | FILE *yyin = (FILE *) 0, *yyout = (FILE *) 0; | | typedef int yy_state_type; | | extern int yylineno; | | int yylineno = 1; | | extern char *yytext; | #define yytext_ptr yytext | | static yy_state_type yy_get_previous_state (void ); | static yy_state_type yy_try_NUL_trans (yy_state_type current_state ); | static int yy_get_next_buffer (void ); | static void yy_fatal_error (yyconst char msg[] ); | | /* Done after the current pattern has been matched and before the | * corresponding action - sets up yytext. | */ | #define YY_DO_BEFORE_ACTION \ | (yytext_ptr) = yy_bp; \ | (yytext_ptr) -= (yy_more_len); \ | yyleng = (size_t) (yy_cp - (yytext_ptr)); \ | (yy_hold_char) = *yy_cp; \ | *yy_cp = '\0'; \ | (yy_c_buf_p) = yy_cp; | | #define YY_NUM_RULES 8 | #define YY_END_OF_BUFFER 9 | /* This struct is not used in this scanner, | but its presence is necessary. */ | struct yy_trans_info | { | flex_int32_t yy_verify; | flex_int32_t yy_nxt; | }; | static yyconst flex_int16_t yy_acclist[23] = | { 0, | 9, 7, 8, 8, 1, 7, 8, 2, 7, 8, | 3, 7, 8, 4, 7, 8, 5, 7, 8, 6, | 7, 8 | } ; | | static yyconst flex_int16_t yy_accept[14] = | { 0, | 1, 1, 1, 2, 4, 5, 8, 11, 14, 17, | 20, 23, 23 | } ; | | static yyconst flex_int32_t yy_ec[256] = | { 0, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 3, 4, 5, 6, | | 7, 8, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, | 1, 1, 1, 1, 1 | } ; | | static yyconst flex_int32_t yy_meta[9] = | { 0, | 1, 1, 1, 1, 1, 1, 1, 1 | } ; | | static yyconst flex_int16_t yy_base[13] = | { 0, | 0, 0, 9, 10, 10, 10, 10, 10, 10, 10, | 10, 10 | } ; | | static yyconst flex_int16_t yy_def[13] = | { 0, | 12, 1, 12, 12, 12, 12, 12, 12, 12, 12, | 12, 0 | } ; | | static yyconst flex_int16_t yy_nxt[19] = | { 0, | 4, 5, 6, 7, 8, 9, 10, 11, 12, 3, | 12, 12, 12, 12, 12, 12, 12, 12 | } ; | | static yyconst flex_int16_t yy_chk[19] = | { 0, | 1, 1, 1, 1, 1, 1, 1, 1, 3, 12, | 12, 12, 12, 12, 12, 12, 12, 12 | } ; | | extern int yy_flex_debug; | int yy_flex_debug = 0; | | static yy_state_type *yy_state_buf=0, *yy_state_ptr=0; | static char *yy_full_match; | static int yy_lp; | #define REJECT \ | { \ | *yy_cp = (yy_hold_char); /* undo effects of setting up yytext */ \ | yy_cp = (yy_full_match); /* restore poss. backed-over text */ \ | ++(yy_lp); \ | goto find_rule; \ | } | | static int yy_more_flag = 0; | static int yy_more_len = 0; | #define yymore() ((yy_more_flag) = 1) | #define YY_MORE_ADJ (yy_more_len) | #define YY_RESTORE_YY_MORE_OFFSET | char *yytext; | #line 1 "conftest.l" | #line 472 "lex.yy.c" | | #define INITIAL 0 | | #ifndef YY_NO_UNISTD_H | /* Special case for "unistd.h", since it is non-ANSI. We include it way | * down here because we want the user's section 1 to have been scanned first. | * The user has a chance to override it with an option. | */ | #include | #endif | | #ifndef YY_EXTRA_TYPE | #define YY_EXTRA_TYPE void * | #endif | | static int yy_init_globals (void ); | | /* Macros after this point can all be overridden by user definitions in | * section 1. | */ | | #ifndef YY_SKIP_YYWRAP | #ifdef __cplusplus | extern "C" int yywrap (void ); | #else | extern int yywrap (void ); | #endif | #endif | | static void yyunput (int c,char *buf_ptr ); | | #ifndef yytext_ptr | static void yy_flex_strncpy (char *,yyconst char *,int ); | #endif | | #ifdef YY_NEED_STRLEN | static int yy_flex_strlen (yyconst char * ); | #endif | | #ifndef YY_NO_INPUT | | #ifdef __cplusplus | static int yyinput (void ); | #else | static int input (void ); | #endif | | #endif | | /* Amount of stuff to slurp up with each read. */ | #ifndef YY_READ_BUF_SIZE | #define YY_READ_BUF_SIZE 8192 | #endif | | /* Copy whatever the last rule matched to the standard output. */ | #ifndef ECHO | /* This used to be an fputs(), but since the string might contain NUL's, | * we now use fwrite(). | */ | #define ECHO (void) fwrite( yytext, yyleng, 1, yyout ) | #endif | | /* Gets input and stuffs it into "buf". number of characters read, or YY_NULL, | * is returned in "result". | */ | #ifndef YY_INPUT | #define YY_INPUT(buf,result,max_size) \ | if ( YY_CURRENT_BUFFER_LVALUE->yy_is_interactive ) \ | { \ | int c = '*'; \ | size_t n; \ | for ( n = 0; n < max_size && \ | (c = getc( yyin )) != EOF && c != '\n'; ++n ) \ | buf[n] = (char) c; \ | if ( c == '\n' ) \ | buf[n++] = (char) c; \ | if ( c == EOF && ferror( yyin ) ) \ | YY_FATAL_ERROR( "input in flex scanner failed" ); \ | result = n; \ | } \ | else \ | { \ | errno=0; \ | while ( (result = fread(buf, 1, max_size, yyin))==0 && ferror(yyin)) \ | { \ | if( errno != EINTR) \ | { \ | YY_FATAL_ERROR( "input in flex scanner failed" ); \ | break; \ | } \ | errno=0; \ | clearerr(yyin); \ | } \ | }\ | \ | | #endif | | /* No semi-colon after return; correct usage is to write "yyterminate();" - | * we don't want an extra ';' after the "return" because that will cause | * some compilers to complain about unreachable statements. | */ | #ifndef yyterminate | #define yyterminate() return YY_NULL | #endif | | /* Number of entries by which start-condition stack grows. */ | #ifndef YY_START_STACK_INCR | #define YY_START_STACK_INCR 25 | #endif | | /* Report a fatal error. */ | #ifndef YY_FATAL_ERROR | #define YY_FATAL_ERROR(msg) yy_fatal_error( msg ) | #endif | | /* end tables serialization structures and prototypes */ | | /* Default declaration of generated scanner - a define so the user can | * easily add parameters. | */ | #ifndef YY_DECL | #define YY_DECL_IS_OURS 1 | | extern int yylex (void); | | #define YY_DECL int yylex (void) | #endif /* !YY_DECL */ | | /* Code executed at the beginning of each rule, after yytext and yyleng | * have been set up. | */ | #ifndef YY_USER_ACTION | #define YY_USER_ACTION | #endif | | /* Code executed at the end of each rule. */ | #ifndef YY_BREAK | #define YY_BREAK break; | #endif | | #define YY_RULE_SETUP \ | YY_USER_ACTION | | /** The main scanner function which does all the work. | */ | YY_DECL | { | register yy_state_type yy_current_state; | register char *yy_cp, *yy_bp; | register int yy_act; | | #line 1 "conftest.l" | | #line 627 "lex.yy.c" | | if ( !(yy_init) ) | { | (yy_init) = 1; | | #ifdef YY_USER_INIT | YY_USER_INIT; | #endif | | /* Create the reject buffer large enough to save one state per allowed character. */ | if ( ! (yy_state_buf) ) | (yy_state_buf) = (yy_state_type *)yyalloc(YY_STATE_BUF_SIZE ); | | if ( ! (yy_start) ) | (yy_start) = 1; /* first start state */ | | if ( ! yyin ) | yyin = stdin; | | if ( ! yyout ) | yyout = stdout; | | if ( ! YY_CURRENT_BUFFER ) { | yyensure_buffer_stack (); | YY_CURRENT_BUFFER_LVALUE = | yy_create_buffer(yyin,YY_BUF_SIZE ); | } | | yy_load_buffer_state( ); | } | | while ( 1 ) /* loops until end-of-file is reached */ | { | (yy_more_len) = 0; | if ( (yy_more_flag) ) | { | (yy_more_len) = (yy_c_buf_p) - (yytext_ptr); | (yy_more_flag) = 0; | } | yy_cp = (yy_c_buf_p); | | /* Support of yytext. */ | *yy_cp = (yy_hold_char); | | /* yy_bp points to the position in yy_ch_buf of the start of | * the current run. | */ | yy_bp = yy_cp; | | yy_current_state = (yy_start); | | (yy_state_ptr) = (yy_state_buf); | *(yy_state_ptr)++ = yy_current_state; | | yy_match: | do | { | register YY_CHAR yy_c = yy_ec[YY_SC_TO_UI(*yy_cp)]; | while ( yy_chk[yy_base[yy_current_state] + yy_c] != yy_current_state ) | { | yy_current_state = (int) yy_def[yy_current_state]; | if ( yy_current_state >= 13 ) | yy_c = yy_meta[(unsigned int) yy_c]; | } | yy_current_state = yy_nxt[yy_base[yy_current_state] + (unsigned int) yy_c]; | *(yy_state_ptr)++ = yy_current_state; | ++yy_cp; | } | while ( yy_base[yy_current_state] != 10 ); | | yy_find_action: | yy_current_state = *--(yy_state_ptr); | (yy_lp) = yy_accept[yy_current_state]; | find_rule: /* we branch to this label when backing up */ | for ( ; ; ) /* until we find what rule we matched */ | { | if ( (yy_lp) && (yy_lp) < yy_accept[yy_current_state + 1] ) | { | yy_act = yy_acclist[(yy_lp)]; | { | (yy_full_match) = yy_cp; | break; | } | } | --yy_cp; | yy_current_state = *--(yy_state_ptr); | (yy_lp) = yy_accept[yy_current_state]; | } | | YY_DO_BEFORE_ACTION; | | do_action: /* This label is used only to access EOF actions. */ | | switch ( yy_act ) | { /* beginning of action switch */ | case 1: | YY_RULE_SETUP | #line 2 "conftest.l" | { ECHO; } | YY_BREAK | case 2: | YY_RULE_SETUP | #line 3 "conftest.l" | { REJECT; } | YY_BREAK | case 3: | YY_RULE_SETUP | #line 4 "conftest.l" | { yymore (); } | YY_BREAK | case 4: | YY_RULE_SETUP | #line 5 "conftest.l" | { yyless (1); } | YY_BREAK | case 5: | YY_RULE_SETUP | #line 6 "conftest.l" | { yyless (input () != 0); } | YY_BREAK | case 6: | YY_RULE_SETUP | #line 7 "conftest.l" | { unput (yytext[0]); } | YY_BREAK | case 7: | YY_RULE_SETUP | #line 8 "conftest.l" | { BEGIN INITIAL; } | YY_BREAK | case 8: | YY_RULE_SETUP | #line 9 "conftest.l" | ECHO; | YY_BREAK | #line 763 "lex.yy.c" | case YY_STATE_EOF(INITIAL): | yyterminate(); | | case YY_END_OF_BUFFER: | { | /* Amount of text matched not including the EOB char. */ | int yy_amount_of_matched_text = (int) (yy_cp - (yytext_ptr)) - 1; | | /* Undo the effects of YY_DO_BEFORE_ACTION. */ | *yy_cp = (yy_hold_char); | YY_RESTORE_YY_MORE_OFFSET | | if ( YY_CURRENT_BUFFER_LVALUE->yy_buffer_status == YY_BUFFER_NEW ) | { | /* We're scanning a new file or input source. It's | * possible that this happened because the user | * just pointed yyin at a new source and called | * yylex(). If so, then we have to assure | * consistency between YY_CURRENT_BUFFER and our | * globals. Here is the right place to do so, because | * this is the first action (other than possibly a | * back-up) that will match for the new input source. | */ | (yy_n_chars) = YY_CURRENT_BUFFER_LVALUE->yy_n_chars; | YY_CURRENT_BUFFER_LVALUE->yy_input_file = yyin; | YY_CURRENT_BUFFER_LVALUE->yy_buffer_status = YY_BUFFER_NORMAL; | } | | /* Note that here we test for yy_c_buf_p "<=" to the position | * of the first EOB in the buffer, since yy_c_buf_p will | * already have been incremented past the NUL character | * (since all states make transitions on EOB to the | * end-of-buffer state). Contrast this with the test | * in input(). | */ | if ( (yy_c_buf_p) <= &YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[(yy_n_chars)] ) | { /* This was really a NUL. */ | yy_state_type yy_next_state; | | (yy_c_buf_p) = (yytext_ptr) + yy_amount_of_matched_text; | | yy_current_state = yy_get_previous_state( ); | | /* Okay, we're now positioned to make the NUL | * transition. We couldn't have | * yy_get_previous_state() go ahead and do it | * for us because it doesn't know how to deal | * with the possibility of jamming (and we don't | * want to build jamming into it because then it | * will run more slowly). | */ | | yy_next_state = yy_try_NUL_trans( yy_current_state ); | | yy_bp = (yytext_ptr) + YY_MORE_ADJ; | | if ( yy_next_state ) | { | /* Consume the NUL. */ | yy_cp = ++(yy_c_buf_p); | yy_current_state = yy_next_state; | goto yy_match; | } | | else | { | yy_cp = (yy_c_buf_p); | goto yy_find_action; | } | } | | else switch ( yy_get_next_buffer( ) ) | { | case EOB_ACT_END_OF_FILE: | { | (yy_did_buffer_switch_on_eof) = 0; | | if ( yywrap( ) ) | { | /* Note: because we've taken care in | * yy_get_next_buffer() to have set up | * yytext, we can now set up | * yy_c_buf_p so that if some total | * hoser (like flex itself) wants to | * call the scanner after we return the | * YY_NULL, it'll still work - another | * YY_NULL will get returned. | */ | (yy_c_buf_p) = (yytext_ptr) + YY_MORE_ADJ; | | yy_act = YY_STATE_EOF(YY_START); | goto do_action; | } | | else | { | if ( ! (yy_did_buffer_switch_on_eof) ) | YY_NEW_FILE; | } | break; | } | | case EOB_ACT_CONTINUE_SCAN: | (yy_c_buf_p) = | (yytext_ptr) + yy_amount_of_matched_text; | | yy_current_state = yy_get_previous_state( ); | | yy_cp = (yy_c_buf_p); | yy_bp = (yytext_ptr) + YY_MORE_ADJ; | goto yy_match; | | case EOB_ACT_LAST_MATCH: | (yy_c_buf_p) = | &YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[(yy_n_chars)]; | | yy_current_state = yy_get_previous_state( ); | | yy_cp = (yy_c_buf_p); | yy_bp = (yytext_ptr) + YY_MORE_ADJ; | goto yy_find_action; | } | break; | } | | default: | YY_FATAL_ERROR( | "fatal flex scanner internal error--no action found" ); | } /* end of action switch */ | } /* end of scanning one token */ | } /* end of yylex */ | | /* yy_get_next_buffer - try to read in a new buffer | * | * Returns a code representing an action: | * EOB_ACT_LAST_MATCH - | * EOB_ACT_CONTINUE_SCAN - continue scanning from current position | * EOB_ACT_END_OF_FILE - end of file | */ | static int yy_get_next_buffer (void) | { | register char *dest = YY_CURRENT_BUFFER_LVALUE->yy_ch_buf; | register char *source = (yytext_ptr); | register int number_to_move, i; | int ret_val; | | if ( (yy_c_buf_p) > &YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[(yy_n_chars) + 1] ) | YY_FATAL_ERROR( | "fatal flex scanner internal error--end of buffer missed" ); | | if ( YY_CURRENT_BUFFER_LVALUE->yy_fill_buffer == 0 ) | { /* Don't try to fill the buffer, so this is an EOF. */ | if ( (yy_c_buf_p) - (yytext_ptr) - YY_MORE_ADJ == 1 ) | { | /* We matched a single character, the EOB, so | * treat this as a final EOF. | */ | return EOB_ACT_END_OF_FILE; | } | | else | { | /* We matched some text prior to the EOB, first | * process it. | */ | return EOB_ACT_LAST_MATCH; | } | } | | /* Try to read more data. */ | | /* First move last chars to start of buffer. */ | number_to_move = (int) ((yy_c_buf_p) - (yytext_ptr)) - 1; | | for ( i = 0; i < number_to_move; ++i ) | *(dest++) = *(source++); | | if ( YY_CURRENT_BUFFER_LVALUE->yy_buffer_status == YY_BUFFER_EOF_PENDING ) | /* don't do the read, it's not guaranteed to return an EOF, | * just force an EOF | */ | YY_CURRENT_BUFFER_LVALUE->yy_n_chars = (yy_n_chars) = 0; | | else | { | int num_to_read = | YY_CURRENT_BUFFER_LVALUE->yy_buf_size - number_to_move - 1; | | while ( num_to_read <= 0 ) | { /* Not enough room in the buffer - grow it. */ | | YY_FATAL_ERROR( | "input buffer overflow, can't enlarge buffer because scanner uses REJECT" ); | | } | | if ( num_to_read > YY_READ_BUF_SIZE ) | num_to_read = YY_READ_BUF_SIZE; | | /* Read in more data. */ | YY_INPUT( (&YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[number_to_move]), | (yy_n_chars), num_to_read ); | | YY_CURRENT_BUFFER_LVALUE->yy_n_chars = (yy_n_chars); | } | | if ( (yy_n_chars) == 0 ) | { | if ( number_to_move == YY_MORE_ADJ ) | { | ret_val = EOB_ACT_END_OF_FILE; | yyrestart(yyin ); | } | | else | { | ret_val = EOB_ACT_LAST_MATCH; | YY_CURRENT_BUFFER_LVALUE->yy_buffer_status = | YY_BUFFER_EOF_PENDING; | } | } | | else | ret_val = EOB_ACT_CONTINUE_SCAN; | | (yy_n_chars) += number_to_move; | YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[(yy_n_chars)] = YY_END_OF_BUFFER_CHAR; | YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[(yy_n_chars) + 1] = YY_END_OF_BUFFER_CHAR; | | (yytext_ptr) = &YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[0]; | | return ret_val; | } | | /* yy_get_previous_state - get the state just before the EOB char was reached */ | | static yy_state_type yy_get_previous_state (void) | { | register yy_state_type yy_current_state; | register char *yy_cp; | | yy_current_state = (yy_start); | | (yy_state_ptr) = (yy_state_buf); | *(yy_state_ptr)++ = yy_current_state; | | for ( yy_cp = (yytext_ptr) + YY_MORE_ADJ; yy_cp < (yy_c_buf_p); ++yy_cp ) | { | register YY_CHAR yy_c = (*yy_cp ? yy_ec[YY_SC_TO_UI(*yy_cp)] : 1); | while ( yy_chk[yy_base[yy_current_state] + yy_c] != yy_current_state ) | { | yy_current_state = (int) yy_def[yy_current_state]; | if ( yy_current_state >= 13 ) | yy_c = yy_meta[(unsigned int) yy_c]; | } | yy_current_state = yy_nxt[yy_base[yy_current_state] + (unsigned int) yy_c]; | *(yy_state_ptr)++ = yy_current_state; | } | | return yy_current_state; | } | | /* yy_try_NUL_trans - try to make a transition on the NUL character | * | * synopsis | * next_state = yy_try_NUL_trans( current_state ); | */ | static yy_state_type yy_try_NUL_trans (yy_state_type yy_current_state ) | { | register int yy_is_jam; | | register YY_CHAR yy_c = 1; | while ( yy_chk[yy_base[yy_current_state] + yy_c] != yy_current_state ) | { | yy_current_state = (int) yy_def[yy_current_state]; | if ( yy_current_state >= 13 ) | yy_c = yy_meta[(unsigned int) yy_c]; | } | yy_current_state = yy_nxt[yy_base[yy_current_state] + (unsigned int) yy_c]; | yy_is_jam = (yy_current_state == 12); | if ( ! yy_is_jam ) | *(yy_state_ptr)++ = yy_current_state; | | return yy_is_jam ? 0 : yy_current_state; | } | | static void yyunput (int c, register char * yy_bp ) | { | register char *yy_cp; | | yy_cp = (yy_c_buf_p); | | /* undo effects of setting up yytext */ | *yy_cp = (yy_hold_char); | | if ( yy_cp < YY_CURRENT_BUFFER_LVALUE->yy_ch_buf + 2 ) | { /* need to shift things up to make room */ | /* +2 for EOB chars. */ | register int number_to_move = (yy_n_chars) + 2; | register char *dest = &YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[ | YY_CURRENT_BUFFER_LVALUE->yy_buf_size + 2]; | register char *source = | &YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[number_to_move]; | | while ( source > YY_CURRENT_BUFFER_LVALUE->yy_ch_buf ) | *--dest = *--source; | | yy_cp += (int) (dest - source); | yy_bp += (int) (dest - source); | YY_CURRENT_BUFFER_LVALUE->yy_n_chars = | (yy_n_chars) = YY_CURRENT_BUFFER_LVALUE->yy_buf_size; | | if ( yy_cp < YY_CURRENT_BUFFER_LVALUE->yy_ch_buf + 2 ) | YY_FATAL_ERROR( "flex scanner push-back overflow" ); | } | | *--yy_cp = (char) c; | | (yytext_ptr) = yy_bp; | (yy_hold_char) = *yy_cp; | (yy_c_buf_p) = yy_cp; | } | | #ifndef YY_NO_INPUT | #ifdef __cplusplus | static int yyinput (void) | #else | static int input (void) | #endif | | { | int c; | | *(yy_c_buf_p) = (yy_hold_char); | | if ( *(yy_c_buf_p) == YY_END_OF_BUFFER_CHAR ) | { | /* yy_c_buf_p now points to the character we want to return. | * If this occurs *before* the EOB characters, then it's a | * valid NUL; if not, then we've hit the end of the buffer. | */ | if ( (yy_c_buf_p) < &YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[(yy_n_chars)] ) | /* This was really a NUL. */ | *(yy_c_buf_p) = '\0'; | | else | { /* need more input */ | int offset = (yy_c_buf_p) - (yytext_ptr); | ++(yy_c_buf_p); | | switch ( yy_get_next_buffer( ) ) | { | case EOB_ACT_LAST_MATCH: | /* This happens because yy_g_n_b() | * sees that we've accumulated a | * token and flags that we need to | * try matching the token before | * proceeding. But for input(), | * there's no matching to consider. | * So convert the EOB_ACT_LAST_MATCH | * to EOB_ACT_END_OF_FILE. | */ | | /* Reset buffer status. */ | yyrestart(yyin ); | | /*FALLTHROUGH*/ | | case EOB_ACT_END_OF_FILE: | { | if ( yywrap( ) ) | return EOF; | | if ( ! (yy_did_buffer_switch_on_eof) ) | YY_NEW_FILE; | #ifdef __cplusplus | return yyinput(); | #else | return input(); | #endif | } | | case EOB_ACT_CONTINUE_SCAN: | (yy_c_buf_p) = (yytext_ptr) + offset; | break; | } | } | } | | c = *(unsigned char *) (yy_c_buf_p); /* cast for 8-bit char's */ | *(yy_c_buf_p) = '\0'; /* preserve yytext */ | (yy_hold_char) = *++(yy_c_buf_p); | | return c; | } | #endif /* ifndef YY_NO_INPUT */ | | /** Immediately switch to a different input stream. | * @param input_file A readable stream. | * | * @note This function does not reset the start condition to @c INITIAL . | */ | void yyrestart (FILE * input_file ) | { | | if ( ! YY_CURRENT_BUFFER ){ | yyensure_buffer_stack (); | YY_CURRENT_BUFFER_LVALUE = | yy_create_buffer(yyin,YY_BUF_SIZE ); | } | | yy_init_buffer(YY_CURRENT_BUFFER,input_file ); | yy_load_buffer_state( ); | } | | /** Switch to a different input buffer. | * @param new_buffer The new input buffer. | * | */ | void yy_switch_to_buffer (YY_BUFFER_STATE new_buffer ) | { | | /* TODO. We should be able to replace this entire function body | * with | * yypop_buffer_state(); | * yypush_buffer_state(new_buffer); | */ | yyensure_buffer_stack (); | if ( YY_CURRENT_BUFFER == new_buffer ) | return; | | if ( YY_CURRENT_BUFFER ) | { | /* Flush out information for old buffer. */ | *(yy_c_buf_p) = (yy_hold_char); | YY_CURRENT_BUFFER_LVALUE->yy_buf_pos = (yy_c_buf_p); | YY_CURRENT_BUFFER_LVALUE->yy_n_chars = (yy_n_chars); | } | | YY_CURRENT_BUFFER_LVALUE = new_buffer; | yy_load_buffer_state( ); | | /* We don't actually know whether we did this switch during | * EOF (yywrap()) processing, but the only time this flag | * is looked at is after yywrap() is called, so it's safe | * to go ahead and always set it. | */ | (yy_did_buffer_switch_on_eof) = 1; | } | | static void yy_load_buffer_state (void) | { | (yy_n_chars) = YY_CURRENT_BUFFER_LVALUE->yy_n_chars; | (yytext_ptr) = (yy_c_buf_p) = YY_CURRENT_BUFFER_LVALUE->yy_buf_pos; | yyin = YY_CURRENT_BUFFER_LVALUE->yy_input_file; | (yy_hold_char) = *(yy_c_buf_p); | } | | /** Allocate and initialize an input buffer state. | * @param file A readable st