Linux shecky.unidata.ucar.edu 2.6.23.17-88.fc7 #1 SMP Thu May 15 00:02:29 EDT 2008 x86_64 x86_64 x86_64 GNU/Linux ./configure --enable-netcdf-4 --with-hdf5=/shecky/local_par_old --enable-parallel-tests --disable-cxx --disable-f77 --prefix=/shecky/n4_test/install --disable-compiler-recover && make check check_install configure: netCDF 4.0-snapshot2008070100 checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes configure: checking user options checking whether CXX is set to ''... no checking whether FC is set to ''... no checking whether F90 is set to ''... no checking whether this is a netCDF-4.x build... yes configure: Processing NetCDF-4 options. checking whether netCDF-4 is to be built... yes checking whether DAP client is to be built... no checking whether new netCDF-4 C++ API is to be built... no checking whether HDF5 should do data conversions... no checking whether extra example tests should be run... no checking whether parallel IO tests should be run... yes checking whether a location for the HDF5 library was specified... /shecky/local_par_old checking whether a location for the ZLIB library was specified... checking whether a location for the SZLIB library was specified... checking whether netCDF-4 logging is enabled... no checking whether netCDF extra tests should be run (developers only)... no checking whether documentation is to be installed... no checking whether Fortran compiler(s) should be tested during configure... yes checking whether configure should try to set compiler flags... yes checking whether FFIO will be used... no checking whether to skip C++, F77, or F90 APIs if compiler is broken... no checking whether only the C library is desired... no checking whether examples should be built... yes checking whether F77 API is desired... no checking whether F90 API is desired... no checking whether fortran type sizes should be checked... yes checking whether C API is desired... yes checking where to get netCDF C-only library for separate fortran libraries... checking whether CXX API is desired... no checking whether v2 netCDF API should be built... yes checking whether the ncgen/ncdump should be built... yes checking whether large file (> 2GB) tests should be run... no checking whether benchmaks should be run (experimental)... no checking whether extreme numbers should be used in tests... yes checking where to put large temp files if large file tests are run... . checking whether a win32 DLL is desired... no checking whether separate fortran libs are desired... no configure: finding C compiler checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether mpicc accepts -g... yes checking for mpicc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of mpicc... gcc3 checking whether mpicc and cc understand -c and -o together... yes checking for an ANSI C-conforming const... yes configure: finding Fortran compiler (will not be used if Fortran API is not desired) checking for xlf90... no checking for fort... no checking for xlf95... no checking for ifort... no checking for ifc... no checking for efc... no checking for pgf95... no checking for lf95... no checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for xlf... no checking for fort... no checking for xlf95... no checking for ifort... no checking for ifc... no checking for efc... no checking for pgf77... no checking for lf95... no checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes configure: finding C++ compiler (will not be used if C++ API is not desired) checking for cl... no checking for KCC... no checking for CC... no checking for cxx... no checking for cc++... no checking for xlC... no checking for aCC... no checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking dependency style of c++... gcc3 configure: setting up libtool checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 98304 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from mpicc object... ok checking how to run the C preprocessor... mpicc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether c++ accepts -g... (cached) yes checking dependency style of c++... (cached) gcc3 checking how to run the C++ preprocessor... c++ -E checking whether we are using the GNU Fortran 77 compiler... (cached) yes checking whether gfortran accepts -g... (cached) yes checking whether we are using the GNU Fortran compiler... (cached) yes checking whether gfortran accepts -g... (cached) yes checking for objdir... .libs checking if mpicc supports -fno-rtti -fno-exceptions... no checking for mpicc option to produce PIC... -fPIC -DPIC checking if mpicc PIC flag -fPIC -DPIC works... yes checking if mpicc static flag -static works... yes checking if mpicc supports -c -o file.o... yes checking if mpicc supports -c -o file.o... (cached) yes checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for ld used by c++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the c++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC -DPIC checking if c++ PIC flag -fPIC -DPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... yes checking if c++ supports -c -o file.o... (cached) yes checking whether the c++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: finding other utilities checking for a BSD-compatible install... /usr/bin/install -c configure: trying to set flags for this platform checking if _HPUX_SOURCE should be set... no checking if Solaris -Xa option is needed... CFLAGS=-g -O2 checking if we need to set _LARGE_FILES despite results of previous tests... _LARGE_FILES= checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no configure: displaying some results checking CPPFLAGS... checking CC CFLAGS... mpicc -g -O2 checking type mpicc... mpicc is /shecky/local/bin/mpicc checking CXX... c++ checking CXXFLAGS... -g -O2 checking type c++... c++ is /usr/local/bin/c++ checking FC... gfortran checking FFLAGS... -g -O2 checking type gfortran... gfortran is /usr/bin/gfortran checking F90... unset checking AR... ar checking AR_FLAGS... cru checking type ar... ar is /usr/bin/ar checking NM... /usr/bin/nm -B checking NMFLAGS... configure: checking types, headers, and functions checking for stdlib.h... (cached) yes checking for sys/types.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for strlcat... no checking for strerror... yes checking for working alloca.h... yes checking for alloca... yes checking whether isnan is declared... yes checking whether isinf is declared... yes checking whether isfinite is declared... no checking whether signbit is declared... no checking for long long int... yes checking for unsigned long long int... yes checking for struct stat.st_blksize... yes checking for IEEE floating point format... yes checking for size_t... yes checking for off_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking for uchar... no checking whether char is unsigned... no checking whether byte ordering is bigendian... no checking size of short... 2 checking size of int... 4 checking size of long... 8 checking size of float... 4 checking size of double... 8 checking size of off_t... 8 checking size of size_t... 8 checking for manual-page index command... checking what to call the output of the ftpbin target... binary-netcdf-4.0-snapshot2008070100.tar gfortran c++ checking binary distribution directory... /home/ftp/pub/binary/linux_2.6-x86_64 checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for H5Fflush in -lhdf5... yes checking for H5DSis_scale in -lhdf5_hl... yes checking for H5Pget_fapl_mpiposix in -lhdf5... yes checking for H5Pget_fapl_mpio in -lhdf5... yes checking whether parallel I/O features are to be included... yes checking for H5Pset_deflate in -lhdf5... yes checking for gawk... (cached) gawk checking for flex... flex checking lex output file root... lex.yy checking lex library... -lfl checking whether yytext is a pointer... yes checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes configure: generating header files and makefiles configure: creating ./config.status config.status: creating Makefile config.status: creating man/Makefile config.status: creating man4/Makefile config.status: creating fortran/Makefile config.status: creating libsrc/Makefile config.status: creating libsrc4/Makefile config.status: creating nctest/Makefile config.status: creating nc_test4/Makefile config.status: creating nc_test/Makefile config.status: creating ncdump/Makefile config.status: creating ncgen/Makefile config.status: creating nf_test/Makefile config.status: creating cxx/Makefile config.status: creating cxx4/Makefile config.status: creating f90/Makefile config.status: creating examples/Makefile config.status: creating examples/C/Makefile config.status: creating examples/CDL/Makefile config.status: creating examples/CXX/Makefile config.status: creating examples/CXX4/Makefile config.status: creating examples/F90/Makefile config.status: creating examples/F77/Makefile config.status: creating win32/Makefile config.status: creating win32/NET/Makefile config.status: creating win32/NET/libsrc/Makefile config.status: creating win32/NET/ncdump/Makefile config.status: creating win32/NET/ncgen/Makefile config.status: creating win32/NET/examples/Makefile config.status: creating win32/NET/nctest/Makefile config.status: creating win32/NET/nc_test/Makefile config.status: creating config.h config.status: creating fortran/nfconfig1.inc config.status: executing depfiles commands config.status: executing libtool commands Making check in libsrc make[1]: Entering directory `/shecky/n4_test/libsrc' make check-am make[2]: Entering directory `/shecky/n4_test/libsrc' depbase=`echo v2i.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT v2i.lo -MD -MP -MF $depbase.Tpo -c -o v2i.lo v2i.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT v2i.lo -MD -MP -MF .deps/v2i.Tpo -c v2i.c -o v2i.o /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o libnetcdf2.la v2i.lo -lm libtool: link: ar cru .libs/libnetcdf2.a v2i.o libtool: link: ranlib .libs/libnetcdf2.a libtool: link: ( cd ".libs" && rm -f "libnetcdf2.la" && ln -s "../libnetcdf2.la" "libnetcdf2.la" ) depbase=`echo attr.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT attr.lo -MD -MP -MF $depbase.Tpo -c -o attr.lo attr.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT attr.lo -MD -MP -MF .deps/attr.Tpo -c attr.c -o attr.o depbase=`echo ncx.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT ncx.lo -MD -MP -MF $depbase.Tpo -c -o ncx.lo ncx.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT ncx.lo -MD -MP -MF .deps/ncx.Tpo -c ncx.c -o ncx.o depbase=`echo putget.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT putget.lo -MD -MP -MF $depbase.Tpo -c -o putget.lo putget.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT putget.lo -MD -MP -MF .deps/putget.Tpo -c putget.c -o putget.o depbase=`echo dim.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT dim.lo -MD -MP -MF $depbase.Tpo -c -o dim.lo dim.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT dim.lo -MD -MP -MF .deps/dim.Tpo -c dim.c -o dim.o depbase=`echo error.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT error.lo -MD -MP -MF $depbase.Tpo -c -o error.lo error.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT error.lo -MD -MP -MF .deps/error.Tpo -c error.c -o error.o depbase=`echo libvers.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT libvers.lo -MD -MP -MF $depbase.Tpo -c -o libvers.lo libvers.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT libvers.lo -MD -MP -MF .deps/libvers.Tpo -c libvers.c -o libvers.o depbase=`echo nc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT nc.lo -MD -MP -MF $depbase.Tpo -c -o nc.lo nc.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT nc.lo -MD -MP -MF .deps/nc.Tpo -c nc.c -o nc.o depbase=`echo string.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT string.lo -MD -MP -MF $depbase.Tpo -c -o string.lo string.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT string.lo -MD -MP -MF .deps/string.Tpo -c string.c -o string.o depbase=`echo v1hpg.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT v1hpg.lo -MD -MP -MF $depbase.Tpo -c -o v1hpg.lo v1hpg.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT v1hpg.lo -MD -MP -MF .deps/v1hpg.Tpo -c v1hpg.c -o v1hpg.o depbase=`echo var.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT var.lo -MD -MP -MF $depbase.Tpo -c -o var.lo var.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT var.lo -MD -MP -MF .deps/var.Tpo -c var.c -o var.o depbase=`echo utf8proc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT utf8proc.lo -MD -MP -MF $depbase.Tpo -c -o utf8proc.lo utf8proc.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT utf8proc.lo -MD -MP -MF .deps/utf8proc.Tpo -c utf8proc.c -o utf8proc.o depbase=`echo posixio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT posixio.lo -MD -MP -MF $depbase.Tpo -c -o posixio.lo posixio.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I/shecky/local_par_old/include -g -O2 -MT posixio.lo -MD -MP -MF .deps/posixio.Tpo -c posixio.c -o posixio.o posixio.c: In function 'ncio_px_move': posixio.c:816: warning: dereferencing type-punned pointer will break strict-aliasing rules posixio.c: In function 'ncio_spx_move': posixio.c:1243: warning: dereferencing type-punned pointer will break strict-aliasing rules /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o libnetcdf3.la attr.lo ncx.lo putget.lo dim.lo error.lo libvers.lo nc.lo string.lo v1hpg.lo var.lo utf8proc.lo posixio.lo -lm libtool: link: ar cru .libs/libnetcdf3.a attr.o ncx.o putget.o dim.o error.o libvers.o nc.o string.o v1hpg.o var.o utf8proc.o posixio.o libtool: link: ranlib .libs/libnetcdf3.a libtool: link: ( cd ".libs" && rm -f "libnetcdf3.la" && ln -s "../libnetcdf3.la" "libnetcdf3.la" ) make t_nc make[3]: Entering directory `/shecky/n4_test/libsrc' mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -g -O2 -MT t_nc-t_nc.o -MD -MP -MF .deps/t_nc-t_nc.Tpo -c -o t_nc-t_nc.o `test -f 't_nc.c' || echo './'`t_nc.c mv -f .deps/t_nc-t_nc.Tpo .deps/t_nc-t_nc.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o t_nc t_nc-t_nc.o libnetcdf3.la -lm libtool: link: mpicc -g -O2 -o t_nc t_nc-t_nc.o -L/shecky/local_par_old/lib ./.libs/libnetcdf3.a -lm make[3]: Leaving directory `/shecky/n4_test/libsrc' make check-TESTS make[3]: Entering directory `/shecky/n4_test/libsrc' dimrename: IXX nc_close ret = 0 reopen id = 3 for filename test.nc NC done GATTR VAR VATTR VATTR VATTR VATTR VATTR VATTR fill_seq indices 1 2 3 75.000000 != 2.718282 Done got val = 3.250000 got val = 0.000000 got val = 2.718282 got val = 82555 got val = 97 got NC_CHAR val = A (0x41) got NC_CHAR val = B (0x42) got NC_CHAR val = "The red death had long devastated the country." got val = A (0x41) got val = B (0x42) got val = "The red death had long devastated the country." got vals = 0.000000 ... 447.000000 re nc_close ret = 0 PASS: t_nc ================== All 1 tests passed ================== make[3]: Leaving directory `/shecky/n4_test/libsrc' make[2]: Leaving directory `/shecky/n4_test/libsrc' make[1]: Leaving directory `/shecky/n4_test/libsrc' Making check in libsrc4 make[1]: Entering directory `/shecky/n4_test/libsrc4' depbase=`echo nc4attr.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT nc4attr.lo -MD -MP -MF $depbase.Tpo -c -o nc4attr.lo nc4attr.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT nc4attr.lo -MD -MP -MF .deps/nc4attr.Tpo -c nc4attr.c -o nc4attr.o depbase=`echo nc4internal.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT nc4internal.lo -MD -MP -MF $depbase.Tpo -c -o nc4internal.lo nc4internal.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT nc4internal.lo -MD -MP -MF .deps/nc4internal.Tpo -c nc4internal.c -o nc4internal.o depbase=`echo nc4var.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT nc4var.lo -MD -MP -MF $depbase.Tpo -c -o nc4var.lo nc4var.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT nc4var.lo -MD -MP -MF .deps/nc4var.Tpo -c nc4var.c -o nc4var.o depbase=`echo nc4dim.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT nc4dim.lo -MD -MP -MF $depbase.Tpo -c -o nc4dim.lo nc4dim.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT nc4dim.lo -MD -MP -MF .deps/nc4dim.Tpo -c nc4dim.c -o nc4dim.o depbase=`echo ncfunc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT ncfunc.lo -MD -MP -MF $depbase.Tpo -c -o ncfunc.lo ncfunc.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT ncfunc.lo -MD -MP -MF .deps/ncfunc.Tpo -c ncfunc.c -o ncfunc.o depbase=`echo nc4file.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT nc4file.lo -MD -MP -MF $depbase.Tpo -c -o nc4file.lo nc4file.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT nc4file.lo -MD -MP -MF .deps/nc4file.Tpo -c nc4file.c -o nc4file.o depbase=`echo error.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT error.lo -MD -MP -MF $depbase.Tpo -c -o error.lo error.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT error.lo -MD -MP -MF .deps/error.Tpo -c error.c -o error.o depbase=`echo nc4grp.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT nc4grp.lo -MD -MP -MF $depbase.Tpo -c -o nc4grp.lo nc4grp.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT nc4grp.lo -MD -MP -MF .deps/nc4grp.Tpo -c nc4grp.c -o nc4grp.o depbase=`echo nc4type.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT nc4type.lo -MD -MP -MF $depbase.Tpo -c -o nc4type.lo nc4type.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT nc4type.lo -MD -MP -MF .deps/nc4type.Tpo -c nc4type.c -o nc4type.o depbase=`echo nc4hdf.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT nc4hdf.lo -MD -MP -MF $depbase.Tpo -c -o nc4hdf.lo nc4hdf.c &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT nc4hdf.lo -MD -MP -MF .deps/nc4hdf.Tpo -c nc4hdf.c -o nc4hdf.o nc4hdf.c: In function 'nc4_rec_read_metadata': nc4hdf.c:1395: warning: 'member_name' may be used uninitialized in this function nc4hdf.c: In function 'nc4_rec_write_metadata': nc4hdf.c:2132: warning: 'coord_varid' may be used uninitialized in this function nc4hdf.c: In function 'nc4_pg_vara': nc4hdf.c:458: warning: 'xfer_plistid' may be used uninitialized in this function /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -version-number 5:0:0 -o libnetcdf.la -rpath /shecky/n4_test/install/lib nc4attr.lo nc4internal.lo nc4var.lo nc4dim.lo ncfunc.lo nc4file.lo error.lo nc4grp.lo nc4type.lo nc4hdf.lo ../libsrc/libnetcdf3.la ../libsrc/libnetcdf2.la -lm libtool: link: (cd .libs/libnetcdf.lax/libnetcdf3.a && ar x "/shecky/n4_test/libsrc4/../libsrc/.libs/libnetcdf3.a") libtool: link: (cd .libs/libnetcdf.lax/libnetcdf2.a && ar x "/shecky/n4_test/libsrc4/../libsrc/.libs/libnetcdf2.a") copying selected object files to avoid basename conflicts... libtool: link: ln .libs/libnetcdf.lax/libnetcdf3.a/error.o .libs/libnetcdf.lax/lt1-error.o || cp .libs/libnetcdf.lax/libnetcdf3.a/error.o .libs/libnetcdf.lax/lt1-error.o libtool: link: ar cru .libs/libnetcdf.a nc4attr.o nc4internal.o nc4var.o nc4dim.o ncfunc.o nc4file.o error.o nc4grp.o nc4type.o nc4hdf.o .libs/libnetcdf.lax/libnetcdf3.a/ncx.o .libs/libnetcdf.lax/libnetcdf3.a/utf8proc.o .libs/libnetcdf.lax/libnetcdf3.a/nc.o .libs/libnetcdf.lax/libnetcdf3.a/posixio.o .libs/libnetcdf.lax/libnetcdf3.a/string.o .libs/libnetcdf.lax/libnetcdf3.a/attr.o .libs/libnetcdf.lax/libnetcdf3.a/libvers.o .libs/libnetcdf.lax/lt1-error.o .libs/libnetcdf.lax/libnetcdf3.a/dim.o .libs/libnetcdf.lax/libnetcdf3.a/var.o .libs/libnetcdf.lax/libnetcdf3.a/v1hpg.o .libs/libnetcdf.lax/libnetcdf3.a/putget.o .libs/libnetcdf.lax/libnetcdf2.a/v2i.o libtool: link: ranlib .libs/libnetcdf.a libtool: link: rm -fr .libs/libnetcdf.lax .libs/libnetcdf.lax libtool: link: ( cd ".libs" && rm -f "libnetcdf.la" && ln -s "../libnetcdf.la" "libnetcdf.la" ) make tst_h_files tst_h_atts tst_h_atts2 tst_h_vars tst_h_vars2 tst_h_grps tst_h_compounds tst_h_compounds2 tst_h_wrt_cmp tst_h_rd_cmp tst_h_vl tst_h_opaques tst_h_strings tst_h_dimscales tst_h_dimscales2 tst_h_enums tst_lists tst_dims tst_files tst_vars tst_varms tst_unlim_vars tst_atts tst_converts tst_converts2 tst_grps tst_compounds tst_compounds2 tst_vl tst_h_vl2 tst_opaques tst_strings tst_interops tst_enums tst_vars2 tst_utf8 tst_v2 tst_h_par make[2]: Entering directory `/shecky/n4_test/libsrc4' depbase=`echo tst_h_files.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_h_files.o -MD -MP -MF $depbase.Tpo -c -o tst_h_files.o tst_h_files.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_h_files tst_h_files.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_h_files tst_h_files.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_h_atts.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_h_atts.o -MD -MP -MF $depbase.Tpo -c -o tst_h_atts.o tst_h_atts.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_h_atts tst_h_atts.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_h_atts tst_h_atts.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_h_atts2.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_h_atts2.o -MD -MP -MF $depbase.Tpo -c -o tst_h_atts2.o tst_h_atts2.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_h_atts2 tst_h_atts2.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_h_atts2 tst_h_atts2.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_h_vars.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_h_vars.o -MD -MP -MF $depbase.Tpo -c -o tst_h_vars.o tst_h_vars.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_h_vars tst_h_vars.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_h_vars tst_h_vars.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_h_vars2.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_h_vars2.o -MD -MP -MF $depbase.Tpo -c -o tst_h_vars2.o tst_h_vars2.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_h_vars2 tst_h_vars2.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_h_vars2 tst_h_vars2.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_h_grps.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_h_grps.o -MD -MP -MF $depbase.Tpo -c -o tst_h_grps.o tst_h_grps.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_h_grps tst_h_grps.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_h_grps tst_h_grps.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_h_compounds.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_h_compounds.o -MD -MP -MF $depbase.Tpo -c -o tst_h_compounds.o tst_h_compounds.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_h_compounds tst_h_compounds.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_h_compounds tst_h_compounds.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_h_compounds2.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_h_compounds2.o -MD -MP -MF $depbase.Tpo -c -o tst_h_compounds2.o tst_h_compounds2.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_h_compounds2 tst_h_compounds2.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_h_compounds2 tst_h_compounds2.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_h_wrt_cmp.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_h_wrt_cmp.o -MD -MP -MF $depbase.Tpo -c -o tst_h_wrt_cmp.o tst_h_wrt_cmp.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_h_wrt_cmp tst_h_wrt_cmp.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_h_wrt_cmp tst_h_wrt_cmp.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_h_rd_cmp.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_h_rd_cmp.o -MD -MP -MF $depbase.Tpo -c -o tst_h_rd_cmp.o tst_h_rd_cmp.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_h_rd_cmp tst_h_rd_cmp.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_h_rd_cmp tst_h_rd_cmp.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_h_vl.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_h_vl.o -MD -MP -MF $depbase.Tpo -c -o tst_h_vl.o tst_h_vl.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_h_vl tst_h_vl.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_h_vl tst_h_vl.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_h_opaques.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_h_opaques.o -MD -MP -MF $depbase.Tpo -c -o tst_h_opaques.o tst_h_opaques.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_h_opaques tst_h_opaques.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_h_opaques tst_h_opaques.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_h_strings.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_h_strings.o -MD -MP -MF $depbase.Tpo -c -o tst_h_strings.o tst_h_strings.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_h_strings tst_h_strings.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_h_strings tst_h_strings.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_h_dimscales.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_h_dimscales.o -MD -MP -MF $depbase.Tpo -c -o tst_h_dimscales.o tst_h_dimscales.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_h_dimscales tst_h_dimscales.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_h_dimscales tst_h_dimscales.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_h_dimscales2.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_h_dimscales2.o -MD -MP -MF $depbase.Tpo -c -o tst_h_dimscales2.o tst_h_dimscales2.c &&\ mv -f $depbase.Tpo $depbase.Po tst_h_dimscales2.c: In function 'main': tst_h_dimscales2.c:134: warning: 'dimscale_obj.fileno[0]' may be used uninitialized in this function tst_h_dimscales2.c:134: warning: 'dimscale_obj.fileno[1]' may be used uninitialized in this function tst_h_dimscales2.c:134: warning: 'dimscale_obj.objno[0]' may be used uninitialized in this function tst_h_dimscales2.c:134: warning: 'dimscale_obj.objno[1]' may be used uninitialized in this function /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_h_dimscales2 tst_h_dimscales2.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_h_dimscales2 tst_h_dimscales2.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_h_enums.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_h_enums.o -MD -MP -MF $depbase.Tpo -c -o tst_h_enums.o tst_h_enums.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_h_enums tst_h_enums.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_h_enums tst_h_enums.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_lists.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_lists.o -MD -MP -MF $depbase.Tpo -c -o tst_lists.o tst_lists.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_lists tst_lists.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_lists tst_lists.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_dims.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_dims.o -MD -MP -MF $depbase.Tpo -c -o tst_dims.o tst_dims.c &&\ mv -f $depbase.Tpo $depbase.Po tst_dims.c: In function 'main': tst_dims.c:870: warning: dereferencing type-punned pointer will break strict-aliasing rules /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_dims tst_dims.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_dims tst_dims.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_files.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_files.o -MD -MP -MF $depbase.Tpo -c -o tst_files.o tst_files.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_files tst_files.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_files tst_files.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_vars.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_vars.o -MD -MP -MF $depbase.Tpo -c -o tst_vars.o tst_vars.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_vars tst_vars.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_vars tst_vars.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_varms.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_varms.o -MD -MP -MF $depbase.Tpo -c -o tst_varms.o tst_varms.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_varms tst_varms.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_varms tst_varms.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_unlim_vars.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_unlim_vars.o -MD -MP -MF $depbase.Tpo -c -o tst_unlim_vars.o tst_unlim_vars.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_unlim_vars tst_unlim_vars.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_unlim_vars tst_unlim_vars.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_atts.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_atts.o -MD -MP -MF $depbase.Tpo -c -o tst_atts.o tst_atts.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_atts tst_atts.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_atts tst_atts.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_converts.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_converts.o -MD -MP -MF $depbase.Tpo -c -o tst_converts.o tst_converts.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_converts tst_converts.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_converts tst_converts.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_converts2.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_converts2.o -MD -MP -MF $depbase.Tpo -c -o tst_converts2.o tst_converts2.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_converts2 tst_converts2.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_converts2 tst_converts2.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_grps.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_grps.o -MD -MP -MF $depbase.Tpo -c -o tst_grps.o tst_grps.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_grps tst_grps.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_grps tst_grps.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_compounds.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_compounds.o -MD -MP -MF $depbase.Tpo -c -o tst_compounds.o tst_compounds.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_compounds tst_compounds.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_compounds tst_compounds.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_compounds2.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_compounds2.o -MD -MP -MF $depbase.Tpo -c -o tst_compounds2.o tst_compounds2.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_compounds2 tst_compounds2.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_compounds2 tst_compounds2.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_vl.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_vl.o -MD -MP -MF $depbase.Tpo -c -o tst_vl.o tst_vl.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_vl tst_vl.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_vl tst_vl.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_h_vl2.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_h_vl2.o -MD -MP -MF $depbase.Tpo -c -o tst_h_vl2.o tst_h_vl2.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_h_vl2 tst_h_vl2.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_h_vl2 tst_h_vl2.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_opaques.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_opaques.o -MD -MP -MF $depbase.Tpo -c -o tst_opaques.o tst_opaques.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_opaques tst_opaques.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_opaques tst_opaques.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_strings.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_strings.o -MD -MP -MF $depbase.Tpo -c -o tst_strings.o tst_strings.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_strings tst_strings.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_strings tst_strings.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_interops.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_interops.o -MD -MP -MF $depbase.Tpo -c -o tst_interops.o tst_interops.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_interops tst_interops.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_interops tst_interops.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_enums.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_enums.o -MD -MP -MF $depbase.Tpo -c -o tst_enums.o tst_enums.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_enums tst_enums.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_enums tst_enums.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_vars2.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_vars2.o -MD -MP -MF $depbase.Tpo -c -o tst_vars2.o tst_vars2.c &&\ mv -f $depbase.Tpo $depbase.Po tst_vars2.c: In function 'main': tst_vars2.c:41: warning: 'cmode' may be used uninitialized in this function /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_vars2 tst_vars2.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_vars2 tst_vars2.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_utf8.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_utf8.o -MD -MP -MF $depbase.Tpo -c -o tst_utf8.o tst_utf8.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_utf8 tst_utf8.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_utf8 tst_utf8.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_v2.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_v2.o -MD -MP -MF $depbase.Tpo -c -o tst_v2.o tst_v2.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_v2 tst_v2.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_v2 tst_v2.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_h_par.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc -I/shecky/local_par_old/include -g -O2 -MT tst_h_par.o -MD -MP -MF $depbase.Tpo -c -o tst_h_par.o tst_h_par.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_h_par tst_h_par.o libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_h_par tst_h_par.o -L/shecky/local_par_old/lib ./.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm make[2]: Leaving directory `/shecky/n4_test/libsrc4' make check-TESTS make[2]: Entering directory `/shecky/n4_test/libsrc4' *** Checking HDF5 file functions. *** Checking HDF5 file creates and opens...ok. *** Checking HDF5 file creates and opens some more...ok. *** Creating file...ok. *** Tests successful! PASS: tst_h_files *** Checking HDF5 attribute functions. *** Checking HDF5 attribute ordering...ok. *** Checking HDF5 attribute deletes...ok. *** Checking HDF5 attributes attached to the fileid...ok. *** Checking HDF5 attributes in a group...ok. *** Checking HDF5 zero length attributes...ok. *** Checking how HDF5 handles a delete and recreation of dataset with atts...ok. *** Checking some more simple atts...ok. *** Checking some more simple atts even more...ok. *** Tests successful! PASS: tst_h_atts *** Checking HDF5 attribute functions. *** Checking HDF5 attribute ordering some more...ok. *** Checking HDF5 attribute ordering with 9 attributes...(skipping for HDF5 1.8.0 beta1)ok. *** Tests successful! PASS: tst_h_atts2 *** Checking HDF5 variable functions. *** Checking HDF5 boolean variables...ok. *** Checking HDF5 variable with unlimited dimension...ok. *** Checking HDF5 deflate filter setting and getting...ok. *** Checking HDF5 deflatfe, fletcher32, shuffle filter setting and getting...ok. *** Checking HDF5 endianness control...ok. *** Tests successful! PASS: tst_h_vars *** Checking HDF5 variable functions some more. *** Checking HDF5 variable ordering...ok. *** Checking HDF5 variable ordering in root group...ok. *** Checking HDF5 variable ordering flags with redef-type situations...ok. *** Checking HDF5 variable compession and filters...ok. *** Checking fill value...ok. *** Checking fill value of compound type...ok. *** Tests successful! PASS: tst_h_vars2 *** Checking HDF5 group functions. *** Checking out root group...ok. *** Checking out H5Gmove...ok. *** Checking out sub-groups...ok. *** Checking out UTF8 named sub-group...ok. *** Checking out UTF8 named sub-group with group creation ordering...ok. *** Tests successful! PASS: tst_h_grps *** Checking HDF5 compound types. *** Checking simple HDF5 compound types...ok. *** Checking HDF5 compound types and groups...ok. *** Checking HDF5 compound type which contains an array...ok. *** Checking HDF5 compound type 6 different types...ok. *** Checking HDF5 compound variable which contains a compound type...ok. *** Checking HDF5 variable which contains a compound type with different string handling...ok. *** Checking HDF5 compound attribute which contains a compound type...ok. *** Checking HDF5 variable of compound type which contains a string...ok. *** Checking HDF5 compound attribute which contains an array of char...ok. *** Tests successful! PASS: tst_h_compounds *** Checking HDF5 compound types some more. *** Checking HDF5 compound attribute which contains an array of unsigned byte...ok. *** Tests successful! PASS: tst_h_compounds2 *** Checking HDF5 compound types (even more so). *** Checking packing of HDF5 compound types...ok. *** Tests successful! PASS: tst_h_wrt_cmp *** Checking HDF5 compound types (we're almost there kids). *** Checking packing of HDF5 compound types...ok. *** Tests successful! PASS: tst_h_rd_cmp *** Checking HDF5 VLEN types. *** Checking simple HDF5 variable length types...ok. *** Tests successful! PASS: tst_h_vl *** Checking HDF5 opaque types. *** Checking simple HDF5 opaque types...ok. *** Tests successful! PASS: tst_h_opaques *** Checking HDF5 string types. *** Checking scalar string attribute...ok. *** Checking simple HDF5 string types...ok. *** Checking G&S compliance...ok. *** Tests successful! PASS: tst_h_strings *** Checking HDF5 dimension scales. *** Creating simple dimension scales file...ok. *** Checking that simple dimscale file can be read...ok. *** Creating simple dimension scales file with lots of datasets...ok. *** Creating a file with an unlimited dimension scale...ok. *** Checking that unlimited dimscale file can be read...ok. *** Creating some 3D datasets using shared dimscales...ok. *** Checking 3D datasets created with shared dimscales...ok. *** Creating 3D datasets using shared dimscales in groups...ok. *** Checking 3D datasets in groups created with shared dimscales...ok. *** Tests successful! PASS: tst_h_dimscales *** Checking HDF5 dimscales some more. *** Creating a file with one var with one dimension scale...ok. *** Checking that one var, one dimscale file can be read...ok. *** Creating a file with one var with two dimension scales...ok. *** Checking that one var, two dimscales file can be read...ok. *** Tests successful! PASS: tst_h_dimscales2 *** Checking HDF5 enum types. *** Checking simple HDF5 enum type...ok. *** Checking HDF5 enum type missing values...ok. *** Tests successful! PASS: tst_h_enums *** Testing netcdf-4 internal list code. *** testing group list code...ok. *** testing file list code...ok. *** testing attribute list code...ok. *** testing type list code...ok. *** Tests successful! PASS: tst_lists *** Testing netcdf-4 dimensions. *** Checking that netcdf-4 dimids inq works on netcdf-3 file...ok. *** Checking that netcdf-4 dimids inq works on more complex netcdf-3 file...ok. *** Testing file with just one dimension...ok. *** Testing renaming of one dimension...ok. *** Testing file with just one unlimited dimension...ok. *** Testing file with two unlimited dimensions...ok. *** Testing ordering of dimensions...ok. *** Testing file with just one unlimited dimension and one var...HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Gdeprec.c line 872 in H5Gget_objinfo(): cannot stat object major: Invalid arguments to routine minor: Unable to initialize object #001: H5Gdeprec.c line 999 in H5G_get_objinfo(): name doesn't exist major: Symbol table minor: Object already exists #002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #003: H5Gtraverse.c line 691 in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #004: H5Gdeprec.c line 903 in H5G_get_objinfo_cb(): name doesn't exist major: Symbol table minor: Object not found #005: H5Gobj.c line 1096 in H5G_obj_lookup(): can't locate object major: Symbol table minor: Object not found #006: H5Gcompact.c line 527 in H5G_compact_lookup(): object not found major: Symbol table minor: Object not found ok. *** Testing adding a coordinate var to file with dimension...ok. *** Testing adding a coordinate var to file with unlimited dimension...ok. *** Creating file with 1 data var, 2 dims, and 2 coord. vars...HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Gdeprec.c line 872 in H5Gget_objinfo(): cannot stat object major: Invalid arguments to routine minor: Unable to initialize object #001: H5Gdeprec.c line 999 in H5G_get_objinfo(): name doesn't exist major: Symbol table minor: Object already exists #002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #003: H5Gtraverse.c line 691 in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #004: H5Gdeprec.c line 903 in H5G_get_objinfo_cb(): name doesn't exist major: Symbol table minor: Object not found #005: H5Gobj.c line 1096 in H5G_obj_lookup(): can't locate object major: Symbol table minor: Object not found #006: H5Gcompact.c line 527 in H5G_compact_lookup(): object not found major: Symbol table minor: Object not found HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Gdeprec.c line 872 in H5Gget_objinfo(): cannot stat object major: Invalid arguments to routine minor: Unable to initialize object #001: H5Gdeprec.c line 999 in H5G_get_objinfo(): name doesn't exist major: Symbol table minor: Object already exists #002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #003: H5Gtraverse.c line 691 in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #004: H5Gdeprec.c line 903 in H5G_get_objinfo_cb(): name doesn't exist major: Symbol table minor: Object not found #005: H5Gobj.c line 1096 in H5G_obj_lookup(): can't locate object major: Symbol table minor: Object not found #006: H5Gcompact.c line 527 in H5G_compact_lookup(): object not found major: Symbol table minor: Object not found ok. *** Creating file with 3 data vars, 4 dims, and 2 coord. vars...HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Gdeprec.c line 872 in H5Gget_objinfo(): cannot stat object major: Invalid arguments to routine minor: Unable to initialize object #001: H5Gdeprec.c line 999 in H5G_get_objinfo(): name doesn't exist major: Symbol table minor: Object already exists #002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #003: H5Gtraverse.c line 691 in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #004: H5Gdeprec.c line 903 in H5G_get_objinfo_cb(): name doesn't exist major: Symbol table minor: Object not found #005: H5Gobj.c line 1096 in H5G_obj_lookup(): can't locate object major: Symbol table minor: Object not found #006: H5Gcompact.c line 527 in H5G_compact_lookup(): object not found major: Symbol table minor: Object not found HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Gdeprec.c line 872 in H5Gget_objinfo(): cannot stat object major: Invalid arguments to routine minor: Unable to initialize object #001: H5Gdeprec.c line 999 in H5G_get_objinfo(): name doesn't exist major: Symbol table minor: Object already exists #002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #003: H5Gtraverse.c line 691 in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #004: H5Gdeprec.c line 903 in H5G_get_objinfo_cb(): name doesn't exist major: Symbol table minor: Object not found #005: H5Gobj.c line 1096 in H5G_obj_lookup(): can't locate object major: Symbol table minor: Object not found #006: H5Gcompact.c line 527 in H5G_compact_lookup(): object not found major: Symbol table minor: Object not found ok. *** Checking file with dims and only some coordinate vars...HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Gdeprec.c line 872 in H5Gget_objinfo(): cannot stat object major: Invalid arguments to routine minor: Unable to initialize object #001: H5Gdeprec.c line 999 in H5G_get_objinfo(): name doesn't exist major: Symbol table minor: Object already exists #002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #003: H5Gtraverse.c line 691 in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #004: H5Gdeprec.c line 903 in H5G_get_objinfo_cb(): name doesn't exist major: Symbol table minor: Object not found #005: H5Gobj.c line 1096 in H5G_obj_lookup(): can't locate object major: Symbol table minor: Object not found #006: H5Gcompact.c line 527 in H5G_compact_lookup(): object not found major: Symbol table minor: Object not found ok. *** Tests successful! PASS: tst_dims *** Testing netcdf-4 file functions. *** testing version 4.0-snapshot2008070100 of Jul 1 2008 01:04:14 $...ok. *** testing with bad inputs...ok. *** testing simple opens and creates...HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Adeprec.c line 214 in H5Aopen_name(): can't open attribute major: Attribute minor: Can't open object #001: H5A.c line 860 in H5A_open_by_name(): unable to load attribute info from object header major: Attribute minor: Unable to initialize object #002: H5Oattribute.c line 504 in H5O_attr_open_by_name(): can't locate attribute major: Attribute minor: Object not found HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Adeprec.c line 214 in H5Aopen_name(): can't open attribute major: Attribute minor: Can't open object #001: H5A.c line 860 in H5A_open_by_name(): unable to load attribute info from object header major: Attribute minor: Unable to initialize object #002: H5Oattribute.c line 504 in H5O_attr_open_by_name(): can't locate attribute major: Attribute minor: Object not found ok. *** testing more complex opens and creates...ok. *** testing redef for netCDF classic...ok. *** testing redef for netCDF 64-bit offset...ok. *** testing redef for netCDF-4 ...ok. *** testing redef for netCDF-4, with strict netCDF-3 rules...HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Adeprec.c line 214 in H5Aopen_name(): can't open attribute major: Attribute minor: Can't open object #001: H5A.c line 860 in H5A_open_by_name(): unable to load attribute info from object header major: Attribute minor: Unable to initialize object #002: H5Oattribute.c line 504 in H5O_attr_open_by_name(): can't locate attribute major: Attribute minor: Object not found ok. *** testing different formats...ok. *** Tests successful! PASS: tst_files *** Testing netcdf-4 variable functions. *** testing netcdf-4 varids inq on netcdf-3 file...ok. *** testing simple variables...ok. *** testing simple variables with deflation...ok. *** testing netcdf-4 simple variable define...ok. *** testing netcdf-4 less simple variable define...ok. *** testing more complex netcdf-4 variable defines...ok. *** testing fill values...ok. *** testing more fill values...ok. *** testing lots of variables...ok. *** testing 4D example file in classic format...ok. *** testing 4D example file in 64-bit offset format...ok. *** testing 4D example file in netCDF-4/HDF5 format...HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Gdeprec.c line 872 in H5Gget_objinfo(): cannot stat object major: Invalid arguments to routine minor: Unable to initialize object #001: H5Gdeprec.c line 999 in H5G_get_objinfo(): name doesn't exist major: Symbol table minor: Object already exists #002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #003: H5Gtraverse.c line 691 in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #004: H5Gdeprec.c line 903 in H5G_get_objinfo_cb(): name doesn't exist major: Symbol table minor: Object not found #005: H5Gobj.c line 1096 in H5G_obj_lookup(): can't locate object major: Symbol table minor: Object not found #006: H5Gcompact.c line 527 in H5G_compact_lookup(): object not found major: Symbol table minor: Object not found HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Gdeprec.c line 872 in H5Gget_objinfo(): cannot stat object major: Invalid arguments to routine minor: Unable to initialize object #001: H5Gdeprec.c line 999 in H5G_get_objinfo(): name doesn't exist major: Symbol table minor: Object already exists #002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #003: H5Gtraverse.c line 691 in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #004: H5Gdeprec.c line 903 in H5G_get_objinfo_cb(): name doesn't exist major: Symbol table minor: Object not found #005: H5Gobj.c line 1096 in H5G_obj_lookup(): can't locate object major: Symbol table minor: Object not found #006: H5Gcompact.c line 527 in H5G_compact_lookup(): object not found major: Symbol table minor: Object not found ok. *** testing 4D example file in netCDF-4/HDF5 format with classic model rules...HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Adeprec.c line 214 in H5Aopen_name(): can't open attribute major: Attribute minor: Can't open object #001: H5A.c line 860 in H5A_open_by_name(): unable to load attribute info from object header major: Attribute minor: Unable to initialize object #002: H5Oattribute.c line 504 in H5O_attr_open_by_name(): can't locate attribute major: Attribute minor: Object not found HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Gdeprec.c line 872 in H5Gget_objinfo(): cannot stat object major: Invalid arguments to routine minor: Unable to initialize object #001: H5Gdeprec.c line 999 in H5G_get_objinfo(): name doesn't exist major: Symbol table minor: Object already exists #002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #003: H5Gtraverse.c line 691 in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #004: H5Gdeprec.c line 903 in H5G_get_objinfo_cb(): name doesn't exist major: Symbol table minor: Object not found #005: H5Gobj.c line 1096 in H5G_obj_lookup(): can't locate object major: Symbol table minor: Object not found #006: H5Gcompact.c line 527 in H5G_compact_lookup(): object not found major: Symbol table minor: Object not found HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Gdeprec.c line 872 in H5Gget_objinfo(): cannot stat object major: Invalid arguments to routine minor: Unable to initialize object #001: H5Gdeprec.c line 999 in H5G_get_objinfo(): name doesn't exist major: Symbol table minor: Object already exists #002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #003: H5Gtraverse.c line 691 in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #004: H5Gdeprec.c line 903 in H5G_get_objinfo_cb(): name doesn't exist major: Symbol table minor: Object not found #005: H5Gobj.c line 1096 in H5G_obj_lookup(): can't locate object major: Symbol table minor: Object not found #006: H5Gcompact.c line 527 in H5G_compact_lookup(): object not found major: Symbol table minor: Object not found ok. *** Tests successful! PASS: tst_vars *** Testing netcdf-4 mapped variable functions. *** testing mapping with 2x2 variable...ok. *** testing mapping with 2x3 variable...ok. *** testing simple example from C Users' Guide...ok. *** testing transposed rh example from C Users' Guide...ok. *** Tests successful! PASS: tst_varms *** Testing netcdf-4 variable with unlimited dimensions. *** Testing file with one var, one unlim dim...ok. *** Tests successful! PASS: tst_unlim_vars *** Testing netcdf-4 attribute functions. *** testing really simple global atts...ok. *** testing simple global atts...HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Adeprec.c line 214 in H5Aopen_name(): can't open attribute major: Attribute minor: Can't open object #001: H5A.c line 860 in H5A_open_by_name(): unable to load attribute info from object header major: Attribute minor: Unable to initialize object #002: H5Oattribute.c line 504 in H5O_attr_open_by_name(): can't locate attribute major: Attribute minor: Object not found ok. *** testing attribute data type conversions...ok. *** testing simple variable atts...ok. *** testing zero-length attributes... this test skipped for HDF 1.8.0 beta1ok. *** testing zero-length attributes and redef...(this test skipped for HDF5-1.8.0 beta1ok. *** testing attribute deletes and renames...ok. *** testing attribute create order...HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Adeprec.c line 214 in H5Aopen_name(): can't open attribute major: Attribute minor: Can't open object #001: H5A.c line 860 in H5A_open_by_name(): unable to load attribute info from object header major: Attribute minor: Unable to initialize object #002: H5Oattribute.c line 504 in H5O_attr_open_by_name(): can't locate attribute major: Attribute minor: Object not found ok. *** testing attribute ordering some more...HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Adeprec.c line 214 in H5Aopen_name(): can't open attribute major: Attribute minor: Can't open object #001: H5A.c line 860 in H5A_open_by_name(): unable to load attribute info from object header major: Attribute minor: Unable to initialize object #002: H5Oattribute.c line 504 in H5O_attr_open_by_name(): can't locate attribute major: Attribute minor: Object not found ok. *** testing attribute ordering even more...HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Adeprec.c line 214 in H5Aopen_name(): can't open attribute major: Attribute minor: Can't open object #001: H5A.c line 860 in H5A_open_by_name(): unable to load attribute info from object header major: Attribute minor: Unable to initialize object #002: H5Oattribute.c line 504 in H5O_attr_open_by_name(): can't locate attribute major: Attribute minor: Object not found ok. *** testing attributes and enddef/redef...HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Adeprec.c line 214 in H5Aopen_name(): can't open attribute major: Attribute minor: Can't open object #001: H5A.c line 860 in H5A_open_by_name(): unable to load attribute info from object header major: Attribute minor: Unable to initialize object #002: H5Oattribute.c line 504 in H5O_attr_open_by_name(): can't locate attribute major: Attribute minor: Object not found ok. *** Tests successful! PASS: tst_atts *** Testing netcdf data conversion. *** Testing conversion in netCDF classic files... ok. *** Testing conversion in netCDF 64-bit offset files... ok. *** Testing conversion in netCDF netCDF-4 files... ok. *** Testing conversion in netCDF netCDF-4 classic model files... HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Adeprec.c line 214 in H5Aopen_name(): can't open attribute major: Attribute minor: Can't open object #001: H5A.c line 860 in H5A_open_by_name(): unable to load attribute info from object header major: Attribute minor: Unable to initialize object #002: H5Oattribute.c line 504 in H5O_attr_open_by_name(): can't locate attribute major: Attribute minor: Object not found ok. *** Tests successful! PASS: tst_converts *** Testing more netcdf-4 data conversion. *** Testing NC_BYTE converstions...ok. *** Testing MAX_INT converstions...ok. *** Tests successful! PASS: tst_converts2 *** Testing netcdf-4 group functions. *** testing simple group create...ok. *** testing simple nested group creates...ok. *** testing simple sibling group creates...ok. *** testing more group attributes...ok. *** testing groups and dimensions...ok. *** testing groups and vars...ok. *** testing groups and vars...ok. *** testing very simple groups and dimension scoping...ok. *** testing groups and dimension scoping...ok. *** testing more groups and dimension scoping...ok. *** testing groups and unlimited dimensions...ok. *** testing nested groups...ok. *** testing nested groups, user defined types, and enddef...ok. *** creating file with lots of user-defined types...ok. *** creating file with lots of groups...ok. *** Tests successful! PASS: tst_grps *** Testing netcdf-4 user defined type functions. *** testing REALLY simple compound variable create...ok. *** testing simple compound variable create...ok. *** testing simple compound attribute create...ok. *** testing compound variable with new atomic types...ok. *** testing compound variable containing an array of ints...ok. *** creating compound test file...ok. *** Now opening the ref file for this...ok. *** Tests successful! PASS: tst_compounds *** Tests successful! PASS: tst_compounds2 *** Testing netcdf-4 variable length type functions. *** testing vlen (of ints) attribute...ok. *** Tests successful! PASS: tst_vl *** Checking HDF5 VLEN types even more. *** Tests successful! PASS: tst_h_vl2 *** Testing netcdf-4 opaque type. *** testing *really* simple opaque attribute...ok. *** testing opaque attribute...ok. *** testing opaque variable...ok. *** testing 3 opaque types...ok. *** Tests successful! PASS: tst_opaques *** Testing netcdf-4 string type. *** testing string variable...ok. *** testing string attribute...ok. *** testing string var functions...ok. *** testing string attributes...ok. *** testing string fill value...ok. *** Tests successful! PASS: tst_strings *** Testing HDF5/NetCDF-4 interoperability... *** Creating a HDF5 file with one var with two dimension scales...ok. *** Checking that HDF5 file can be read by netCDF-4, and adding an att...ok. *** Checking that one var, two dimscales, one att file can still be read by HDF5...ok. *** Tests successful! PASS: tst_interops *** Testing netcdf-4 enum type. *** creating enum type...ok. *** testing enum attribute...ok. *** testing enum fill value ...ok. *** testing enum interuptus...ok. *** Tests successful! PASS: tst_enums *** Testing netcdf-4 variable functions, even more. *** Testing with classic format: **** testing simple fill value attribute creation...ok. **** testing simple fill value with data read...ok. **** testing fill value with one other attribute...ok. **** testing fill value with three other attributes...ok. **** testing fill value with simple example...ok. **** testing fill value with example from cxx tests in v2 api...ok. *** Testing with 64-bit offset format: **** testing simple fill value attribute creation...ok. **** testing simple fill value with data read...ok. **** testing fill value with one other attribute...ok. **** testing fill value with three other attributes...ok. **** testing fill value with simple example...ok. **** testing fill value with example from cxx tests in v2 api...ok. *** Testing with HDF5: **** testing simple fill value attribute creation...ok. **** testing simple fill value with data read...ok. **** testing fill value with one other attribute...ok. **** testing fill value with three other attributes...ok. **** testing fill value with simple example...ok. **** testing fill value with example from cxx tests in v2 api...ok. *** Testing with HDF5, netCDF Classic Model: **** testing simple fill value attribute creation...HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Adeprec.c line 214 in H5Aopen_name(): can't open attribute major: Attribute minor: Can't open object #001: H5A.c line 860 in H5A_open_by_name(): unable to load attribute info from object header major: Attribute minor: Unable to initialize object #002: H5Oattribute.c line 504 in H5O_attr_open_by_name(): can't locate attribute major: Attribute minor: Object not found ok. **** testing simple fill value with data read...HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Adeprec.c line 214 in H5Aopen_name(): can't open attribute major: Attribute minor: Can't open object #001: H5A.c line 860 in H5A_open_by_name(): unable to load attribute info from object header major: Attribute minor: Unable to initialize object #002: H5Oattribute.c line 504 in H5O_attr_open_by_name(): can't locate attribute major: Attribute minor: Object not found ok. **** testing fill value with one other attribute...HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Adeprec.c line 214 in H5Aopen_name(): can't open attribute major: Attribute minor: Can't open object #001: H5A.c line 860 in H5A_open_by_name(): unable to load attribute info from object header major: Attribute minor: Unable to initialize object #002: H5Oattribute.c line 504 in H5O_attr_open_by_name(): can't locate attribute major: Attribute minor: Object not found ok. **** testing fill value with three other attributes...HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Adeprec.c line 214 in H5Aopen_name(): can't open attribute major: Attribute minor: Can't open object #001: H5A.c line 860 in H5A_open_by_name(): unable to load attribute info from object header major: Attribute minor: Unable to initialize object #002: H5Oattribute.c line 504 in H5O_attr_open_by_name(): can't locate attribute major: Attribute minor: Object not found ok. **** testing fill value with simple example...HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Adeprec.c line 214 in H5Aopen_name(): can't open attribute major: Attribute minor: Can't open object #001: H5A.c line 860 in H5A_open_by_name(): unable to load attribute info from object header major: Attribute minor: Unable to initialize object #002: H5Oattribute.c line 504 in H5O_attr_open_by_name(): can't locate attribute major: Attribute minor: Object not found ok. **** testing fill value with example from cxx tests in v2 api...ok. **** testing create order varids...HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Adeprec.c line 214 in H5Aopen_name(): can't open attribute major: Attribute minor: Can't open object #001: H5A.c line 860 in H5A_open_by_name(): unable to load attribute info from object header major: Attribute minor: Unable to initialize object #002: H5Oattribute.c line 504 in H5O_attr_open_by_name(): can't locate attribute major: Attribute minor: Object not found ok. **** testing simple variable renaming...ok. **** testing dimension and variable renaming...ok. **** testing endianness...ok. **** testing chunking...ok. **** testing contiguous storage...ok. **** testing extreme numbers dude...ok. **** testing error codes for name clashes...ok. **** testing error codes for name clashes some more...ok. **** testing error codes for name clashes even more...ok. **** testing error code for too-large chunks...ok. *** Tests successful! PASS: tst_vars2 HDF5-DIAG: Error detected in HDF5 (1.8.1) thread 0: #000: H5Gdeprec.c line 872 in H5Gget_objinfo(): cannot stat object major: Invalid arguments to routine minor: Unable to initialize object #001: H5Gdeprec.c line 999 in H5G_get_objinfo(): name doesn't exist major: Symbol table minor: Object already exists #002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #003: H5Gtraverse.c line 691 in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #004: H5Gdeprec.c line 903 in H5G_get_objinfo_cb(): name doesn't exist major: Symbol table minor: Object not found #005: H5Gobj.c line 1096 in H5G_obj_lookup(): can't locate object major: Symbol table minor: Object not found #006: H5Gcompact.c line 527 in H5G_compact_lookup(): object not found major: Symbol table minor: Object not found HDF5-DIAG: Error detected in HDF5 (1.8.1) thread 0: #000: H5Gdeprec.c line 872 in H5Gget_objinfo(): cannot stat object major: Invalid arguments to routine minor: Unable to initialize object #001: H5Gdeprec.c line 999 in H5G_get_objinfo(): name doesn't exist major: Symbol table minor: Object already exists #002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #003: H5Gtraverse.c line 691 in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #004: H5Gdeprec.c line 903 in H5G_get_objinfo_cb(): name doesn't exist major: Symbol table minor: Object not found #005: H5Gobj.c line 1096 in H5G_obj_lookup(): can't locate object major: Symbol table minor: Object not found #006: H5Gcompact.c line 527 in H5G_compact_lookup(): object not found major: Symbol table minor: Object not found HDF5-DIAG: Error detected in HDF5 (1.8.1) thread 0: #000: H5Gdeprec.c line 872 in H5Gget_objinfo(): cannot stat object major: Invalid arguments to routine minor: Unable to initialize object #001: H5Gdeprec.c line 999 in H5G_get_objinfo(): name doesn't exist major: Symbol table minor: Object already exists #002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #003: H5Gtraverse.c line 691 in H5G_traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #004: H5Gdeprec.c line 903 in H5G_get_objinfo_cb(): name doesn't exist major: Symbol table minor: Object not found #005: H5Gobj.c line 1096 in H5G_obj_lookup(): can't locate object major: Symbol table minor: Object not found #006: H5Gcompact.c line 527 in H5G_compact_lookup(): object not found major: Symbol table minor: Object not found *** Testing UTF-8 names. *** creating UTF-8 names in classic model netcdf files...ok. *** renaming to UTF-8 names in classic model netcdf files...ok. *** creating UTF-8 names in netcdf-4 file...ok. *** Tests successful! PASS: tst_utf8 *** Testing netcdf-4 v2 API functions. *** testing simple opens and creates...ok. *** Tests successful! PASS: tst_v2 Testing parallel I/O with HDF5... *** Creating file for parallel I/O read, and rereading it... p=1, write_rate=315.607, read_rate=2106.79 ok. *** Tests successful! *** Creating file for parallel I/O read, and rereading it... p=2, write_rate=381.356, read_rate=1706.03 ok. *** Tests successful! rank 0 in job 233 shecky.unidata.ucar.edu_50117 caused collective abort of all ranks exit status of rank 0: return code 0 *** Creating file for parallel I/O read, and rereading it... p=4, write_rate=284.492, read_rate=1692.18 ok. *** Tests successful! rank 0 in job 234 shecky.unidata.ucar.edu_50117 caused collective abort of all ranks exit status of rank 0: killed by signal 9 SUCCESS!!! PASS: run_par_tests.sh =================== All 38 tests passed =================== make[2]: Leaving directory `/shecky/n4_test/libsrc4' make[1]: Leaving directory `/shecky/n4_test/libsrc4' Making check in nctest make[1]: Entering directory `/shecky/n4_test/nctest' make nctest make[2]: Entering directory `/shecky/n4_test/nctest' depbase=`echo add.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc4 -g -O2 -MT add.o -MD -MP -MF $depbase.Tpo -c -o add.o add.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo atttests.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc4 -g -O2 -MT atttests.o -MD -MP -MF $depbase.Tpo -c -o atttests.o atttests.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo cdftests.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc4 -g -O2 -MT cdftests.o -MD -MP -MF $depbase.Tpo -c -o cdftests.o cdftests.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo dimtests.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc4 -g -O2 -MT dimtests.o -MD -MP -MF $depbase.Tpo -c -o dimtests.o dimtests.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo driver.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc4 -g -O2 -MT driver.o -MD -MP -MF $depbase.Tpo -c -o driver.o driver.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo emalloc.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc4 -g -O2 -MT emalloc.o -MD -MP -MF $depbase.Tpo -c -o emalloc.o emalloc.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo error.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc4 -g -O2 -MT error.o -MD -MP -MF $depbase.Tpo -c -o error.o error.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo misctest.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc4 -g -O2 -MT misctest.o -MD -MP -MF $depbase.Tpo -c -o misctest.o misctest.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo rec.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc4 -g -O2 -MT rec.o -MD -MP -MF $depbase.Tpo -c -o rec.o rec.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo slabs.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc4 -g -O2 -MT slabs.o -MD -MP -MF $depbase.Tpo -c -o slabs.o slabs.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo val.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc4 -g -O2 -MT val.o -MD -MP -MF $depbase.Tpo -c -o val.o val.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo vardef.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc4 -g -O2 -MT vardef.o -MD -MP -MF $depbase.Tpo -c -o vardef.o vardef.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo varget.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc4 -g -O2 -MT varget.o -MD -MP -MF $depbase.Tpo -c -o varget.o varget.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo vargetg.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc4 -g -O2 -MT vargetg.o -MD -MP -MF $depbase.Tpo -c -o vargetg.o vargetg.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo varput.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc4 -g -O2 -MT varput.o -MD -MP -MF $depbase.Tpo -c -o varput.o varput.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo varputg.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc4 -g -O2 -MT varputg.o -MD -MP -MF $depbase.Tpo -c -o varputg.o varputg.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo vartests.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc4 -g -O2 -MT vartests.o -MD -MP -MF $depbase.Tpo -c -o vartests.o vartests.c &&\ mv -f $depbase.Tpo $depbase.Po vartests.c: In function 'test_varputget1': vartests.c:260: warning: 'tmpp' may be used uninitialized in this function vartests.c:259: warning: 'voidp' may be used uninitialized in this function depbase=`echo vputget.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc4 -g -O2 -MT vputget.o -MD -MP -MF $depbase.Tpo -c -o vputget.o vputget.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo vputgetg.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../libsrc4 -g -O2 -MT vputgetg.o -MD -MP -MF $depbase.Tpo -c -o vputgetg.o vputgetg.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L../libsrc4 -L/shecky/local_par_old/lib -o nctest add.o atttests.o cdftests.o dimtests.o driver.o emalloc.o error.o misctest.o rec.o slabs.o val.o vardef.o varget.o vargetg.o varput.o varputg.o vartests.o vputget.o vputgetg.o -lm ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o nctest add.o atttests.o cdftests.o dimtests.o driver.o emalloc.o error.o misctest.o rec.o slabs.o val.o vardef.o varget.o vargetg.o varput.o varputg.o vartests.o vputget.o vputgetg.o -L/shecky/n4_test/libsrc4 -L/shecky/local_par_old/lib ../libsrc4/.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm make[2]: Leaving directory `/shecky/n4_test/nctest' make check-TESTS make[2]: Entering directory `/shecky/n4_test/nctest' Testing V2 API with 3 different netCDF formats. Switching to netCDF classic format. *** Testing nccreate ... ok *** *** Testing ncopen ... ok *** *** Testing ncredef ... ok *** *** Testing ncendef ... ok *** *** Testing ncclose ... ok *** *** Testing ncinquire ... ok *** *** Testing ncsync ... ok *** *** Testing ncabort ... ok *** *** Testing ncdimdef ... ok *** *** Testing ncdimid ... ok *** *** Testing ncdiminq ... ok *** *** Testing ncdimrename ... ok *** *** Testing ncvardef ... ok *** *** Testing ncvarid ... ok *** *** Testing ncvarinq ... ok *** *** Testing ncvarput1 ... ok *** *** Testing ncvarget1 ... ok *** *** Testing ncvarput ... ok *** *** Testing ncvarget ... ok *** *** Testing ncvarputg ... ok *** *** Testing ncvargetg ... ok *** *** Testing ncrecinq ... ok *** *** Testing ncrecput ... ok *** *** Testing ncrecget ... ok *** *** Testing ncvarrename ... ok *** *** Testing ncattput ... ok *** *** Testing ncattinq ... ok *** *** Testing ncattget ... ok *** *** Testing ncattcopy ... ok *** *** Testing ncattname ... ok *** *** Testing ncattrename ... ok *** *** Testing ncattdel ... ok *** *** Testing nctypelen ... ok *** Switching to 64-bit offset format. *** Testing nccreate ... ok *** *** Testing ncopen ... ok *** *** Testing ncredef ... ok *** *** Testing ncendef ... ok *** *** Testing ncclose ... ok *** *** Testing ncinquire ... ok *** *** Testing ncsync ... ok *** *** Testing ncabort ... ok *** *** Testing ncdimdef ... ok *** *** Testing ncdimid ... ok *** *** Testing ncdiminq ... ok *** *** Testing ncdimrename ... ok *** *** Testing ncvardef ... ok *** *** Testing ncvarid ... ok *** *** Testing ncvarinq ... ok *** *** Testing ncvarput1 ... ok *** *** Testing ncvarget1 ... ok *** *** Testing ncvarput ... ok *** *** Testing ncvarget ... ok *** *** Testing ncvarputg ... ok *** *** Testing ncvargetg ... ok *** *** Testing ncrecinq ... ok *** *** Testing ncrecput ... ok *** *** Testing ncrecget ... ok *** *** Testing ncvarrename ... ok *** *** Testing ncattput ... ok *** *** Testing ncattinq ... ok *** *** Testing ncattget ... ok *** *** Testing ncattcopy ... ok *** *** Testing ncattname ... ok *** *** Testing ncattrename ... ok *** *** Testing ncattdel ... ok *** *** Testing nctypelen ... ok *** Switching to netCDF-4 format (with NC_CLASSIC_MODEL). *** Testing nccreate ... HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Adeprec.c line 214 in H5Aopen_name(): can't open attribute major: Attribute minor: Can't open object #001: H5A.c line 860 in H5A_open_by_name(): unable to load attribute info from object header major: Attribute minor: Unable to initialize object #002: H5Oattribute.c line 504 in H5O_attr_open_by_name(): can't locate attribute major: Attribute minor: Object not found ok *** *** Testing ncopen ... ok *** *** Testing ncredef ... ok *** *** Testing ncendef ... ok *** *** Testing ncclose ... ok *** *** Testing ncinquire ... ok *** *** Testing ncsync ... ok *** *** Testing ncabort ... ok *** *** Testing ncdimdef ... ok *** *** Testing ncdimid ... ok *** *** Testing ncdiminq ... ok *** *** Testing ncdimrename ... ok *** *** Testing ncvardef ... ok *** *** Testing ncvarid ... ok *** *** Testing ncvarinq ... ok *** *** Testing ncvarput1 ... ok *** *** Testing ncvarget1 ... ok *** *** Testing ncvarput ... ok *** *** Testing ncvarget ... ok *** *** Testing ncvarputg ... ok *** *** Testing ncvargetg ... ok *** *** Testing ncrecinq ... ok *** *** Testing ncrecput ... ok *** *** Testing ncrecget ... ok *** *** Testing ncvarrename ... ok *** *** Testing ncattput ... ok *** *** Testing ncattinq ... ok *** *** Testing ncattget ... ok *** *** Testing ncattcopy ... HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Adeprec.c line 214 in H5Aopen_name(): can't open attribute major: Attribute minor: Can't open object #001: H5A.c line 860 in H5A_open_by_name(): unable to load attribute info from object header major: Attribute minor: Unable to initialize object #002: H5Oattribute.c line 504 in H5O_attr_open_by_name(): can't locate attribute major: Attribute minor: Object not found ok *** *** Testing ncattname ... ok *** *** Testing ncattrename ... ok *** *** Testing ncattdel ... ok *** *** Testing nctypelen ... ok *** Total number of failures: 0 nctest SUCCESS!!! PASS: nctest PASS: compare_test_files.sh ================== All 2 tests passed ================== make[2]: Leaving directory `/shecky/n4_test/nctest' make[1]: Leaving directory `/shecky/n4_test/nctest' Making check in ncgen make[1]: Entering directory `/shecky/n4_test/ncgen' depbase=`echo main.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT main.o -MD -MP -MF $depbase.Tpo -c -o main.o main.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo load.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT load.o -MD -MP -MF $depbase.Tpo -c -o load.o load.c &&\ mv -f $depbase.Tpo $depbase.Po load.c: In function 'load_netcdf': load.c:480: warning: 'shortvalp' may be used uninitialized in this function load.c:482: warning: 'floatvalp' may be used uninitialized in this function load.c:481: warning: 'intvalp' may be used uninitialized in this function load.c:479: warning: 'charvalp' may be used uninitialized in this function load.c:483: warning: 'doublevalp' may be used uninitialized in this function load.c: In function 'put_variable': load.c:67: warning: 'doublevalp' may be used uninitialized in this function load.c:66: warning: 'floatvalp' may be used uninitialized in this function load.c:65: warning: 'intvalp' may be used uninitialized in this function load.c:64: warning: 'shortvalp' may be used uninitialized in this function load.c:63: warning: 'charvalp' may be used uninitialized in this function depbase=`echo ncgentab.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT ncgentab.o -MD -MP -MF $depbase.Tpo -c -o ncgentab.o ncgentab.c &&\ mv -f $depbase.Tpo $depbase.Po /usr/ccs/bin/yaccpar:5: warning: ignoring #pragma ident /usr/ccs/bin/yaccpar: In function 'yyparse': /usr/ccs/bin/yaccpar:374: warning: label 'yyerrlab' defined but not used /usr/ccs/bin/yaccpar:164: warning: label 'yynewstate' defined but not used /usr/ccs/bin/yaccpar: At top level: ncgen.y:11: warning: 'SccsId' defined but not used lex.yy.c:1725: warning: 'yyunput' defined but not used depbase=`echo escapes.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT escapes.o -MD -MP -MF $depbase.Tpo -c -o escapes.o escapes.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo getfill.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT getfill.o -MD -MP -MF $depbase.Tpo -c -o getfill.o getfill.c &&\ mv -f $depbase.Tpo $depbase.Po getfill.c: In function 'nc_fill': getfill.c:58: warning: 'double_valp' may be used uninitialized in this function getfill.c:57: warning: 'float_valp' may be used uninitialized in this function getfill.c:56: warning: 'long_valp' may be used uninitialized in this function getfill.c:55: warning: 'short_valp' may be used uninitialized in this function getfill.c:54: warning: 'char_valp' may be used uninitialized in this function depbase=`echo init.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT init.o -MD -MP -MF $depbase.Tpo -c -o init.o init.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo genlib.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT genlib.o -MD -MP -MF $depbase.Tpo -c -o genlib.o genlib.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o ncgen main.o load.o ncgentab.o escapes.o getfill.o init.o genlib.o ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o ncgen main.o load.o ncgentab.o escapes.o getfill.o init.o genlib.o -L/shecky/local_par_old/lib ../libsrc4/.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm make check-TESTS make[2]: Entering directory `/shecky/n4_test/ncgen' *** Testing ncgen. *** creating classic file c0.nc from c0.cdl... *** creating 64-bit offset file c0_64.nc from c0.cdl... *** Test successful! PASS: run_tests.sh *** Testing ncgen for netCDF-4. *** creating netCDF-4 file c0_4.nc from c0.cdl... *** creating netCDF-4 classic model file c0_4c.nc from c0.cdl... *** Test successful! PASS: run_nc4_tests.sh ================== All 2 tests passed ================== make[2]: Leaving directory `/shecky/n4_test/ncgen' make[1]: Leaving directory `/shecky/n4_test/ncgen' Making check in ncdump make[1]: Entering directory `/shecky/n4_test/ncdump' ../ncgen/ncgen -c -o ctest0.nc ./../ncgen/c0.cdl > ./ctest.c ../ncgen/ncgen -v2 -c -o ctest0_64.nc ./../ncgen/c0.cdl > ./ctest64.c make check-am make[2]: Entering directory `/shecky/n4_test/ncdump' depbase=`echo ncdump.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../nc_test -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT ncdump.o -MD -MP -MF $depbase.Tpo -c -o ncdump.o ncdump.c &&\ mv -f $depbase.Tpo $depbase.Po ncdump.c: In function 'print_enum_type': ncdump.c:914: warning: dereferencing type-punned pointer will break strict-aliasing rules ncdump.c:917: warning: dereferencing type-punned pointer will break strict-aliasing rules ncdump.c:924: warning: dereferencing type-punned pointer will break strict-aliasing rules ncdump.c:927: warning: dereferencing type-punned pointer will break strict-aliasing rules ncdump.c: In function 'pr_attx': ncdump.c:773: warning: 'attvals' may be used uninitialized in this function ncdump.c: In function 'pr_att': ncdump.c:667: warning: 'data' may be used uninitialized in this function ncdump.c:711: warning: 'value' may be used uninitialized in this function ncdump.c: In function 'do_ncdump_rec': ncdump.c:880: warning: 'memval' may be used uninitialized in this function depbase=`echo vardata.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../nc_test -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT vardata.o -MD -MP -MF $depbase.Tpo -c -o vardata.o vardata.c &&\ mv -f $depbase.Tpo $depbase.Po vardata.c: In function 'vardatax': vardata.c:667: warning: 'corsav' may be used uninitialized in this function depbase=`echo dumplib.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../nc_test -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT dumplib.o -MD -MP -MF $depbase.Tpo -c -o dumplib.o dumplib.c &&\ mv -f $depbase.Tpo $depbase.Po dumplib.c: In function 'ncenum_val_tostring': dumplib.c:1225: warning: 'val' may be used uninitialized in this function dumplib.c: In function 'ncenum_typ_tostring': dumplib.c:952: warning: 'val' may be used uninitialized in this function depbase=`echo indent.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../nc_test -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT indent.o -MD -MP -MF $depbase.Tpo -c -o indent.o indent.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o ncdump ncdump.o vardata.o dumplib.o indent.o -lm ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o ncdump ncdump.o vardata.o dumplib.o indent.o -L/shecky/local_par_old/lib ../libsrc4/.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm make rewrite-scalar ctest ctest64 ncdump tst_utf8 tst_create_files tst_h_rdc0 tst_group_data tst_enum_data tst_opaque_data tst_string_data tst_vlen_data tst_comp tst_comp2 tst_nans tst_unicode make[3]: Entering directory `/shecky/n4_test/ncdump' depbase=`echo rewrite-scalar.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../nc_test -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT rewrite-scalar.o -MD -MP -MF $depbase.Tpo -c -o rewrite-scalar.o rewrite-scalar.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o rewrite-scalar rewrite-scalar.o -lm ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o rewrite-scalar rewrite-scalar.o -L/shecky/local_par_old/lib ../libsrc4/.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo ctest.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../nc_test -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT ctest.o -MD -MP -MF $depbase.Tpo -c -o ctest.o ctest.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o ctest ctest.o -lm ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o ctest ctest.o -L/shecky/local_par_old/lib ../libsrc4/.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo ctest64.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../nc_test -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT ctest64.o -MD -MP -MF $depbase.Tpo -c -o ctest64.o ctest64.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o ctest64 ctest64.o -lm ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o ctest64 ctest64.o -L/shecky/local_par_old/lib ../libsrc4/.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm make[3]: `ncdump' is up to date. depbase=`echo tst_utf8.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../nc_test -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT tst_utf8.o -MD -MP -MF $depbase.Tpo -c -o tst_utf8.o tst_utf8.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_utf8 tst_utf8.o -lm ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_utf8 tst_utf8.o -L/shecky/local_par_old/lib ../libsrc4/.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_create_files.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../nc_test -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT tst_create_files.o -MD -MP -MF $depbase.Tpo -c -o tst_create_files.o tst_create_files.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_create_files tst_create_files.o -lm ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_create_files tst_create_files.o -L/shecky/local_par_old/lib ../libsrc4/.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../nc_test -I../nc_test -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT tst_h_rdc0-tst_h_rdc0.o -MD -MP -MF .deps/tst_h_rdc0-tst_h_rdc0.Tpo -c -o tst_h_rdc0-tst_h_rdc0.o `test -f 'tst_h_rdc0.c' || echo './'`tst_h_rdc0.c mv -f .deps/tst_h_rdc0-tst_h_rdc0.Tpo .deps/tst_h_rdc0-tst_h_rdc0.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_h_rdc0 tst_h_rdc0-tst_h_rdc0.o -lm ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_h_rdc0 tst_h_rdc0-tst_h_rdc0.o -L/shecky/local_par_old/lib ../libsrc4/.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_group_data.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../nc_test -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT tst_group_data.o -MD -MP -MF $depbase.Tpo -c -o tst_group_data.o tst_group_data.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_group_data tst_group_data.o -lm ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_group_data tst_group_data.o -L/shecky/local_par_old/lib ../libsrc4/.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_enum_data.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../nc_test -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT tst_enum_data.o -MD -MP -MF $depbase.Tpo -c -o tst_enum_data.o tst_enum_data.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_enum_data tst_enum_data.o -lm ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_enum_data tst_enum_data.o -L/shecky/local_par_old/lib ../libsrc4/.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_opaque_data.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../nc_test -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT tst_opaque_data.o -MD -MP -MF $depbase.Tpo -c -o tst_opaque_data.o tst_opaque_data.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_opaque_data tst_opaque_data.o -lm ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_opaque_data tst_opaque_data.o -L/shecky/local_par_old/lib ../libsrc4/.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_string_data.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../nc_test -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT tst_string_data.o -MD -MP -MF $depbase.Tpo -c -o tst_string_data.o tst_string_data.c &&\ mv -f $depbase.Tpo $depbase.Po tst_string_data.c: In function 'main': tst_string_data.c:40: warning: unused variable 'strings_in' tst_string_data.c:39: warning: unused variable 'missing_val' tst_string_data.c:36: warning: unused variable 'desc_data' tst_string_data.c:35: warning: unused variable 'var_dims' tst_string_data.c:33: warning: unused variable 'i' tst_string_data.c:31: warning: unused variable 'att_len' tst_string_data.c:30: warning: unused variable 'att_type' tst_string_data.c:29: warning: unused variable 'value_in' tst_string_data.c:28: warning: unused variable 'size_in' tst_string_data.c:27: warning: unused variable 'class_in' tst_string_data.c:26: warning: unused variable 'name_in' tst_string_data.c:25: warning: unused variable 'varid' tst_string_data.c:25: warning: unused variable 'dimid' tst_string_data.c:24: warning: unused variable 'ncid' /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_string_data tst_string_data.o -lm ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_string_data tst_string_data.o -L/shecky/local_par_old/lib ../libsrc4/.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_vlen_data.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../nc_test -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT tst_vlen_data.o -MD -MP -MF $depbase.Tpo -c -o tst_vlen_data.o tst_vlen_data.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_vlen_data tst_vlen_data.o -lm ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_vlen_data tst_vlen_data.o -L/shecky/local_par_old/lib ../libsrc4/.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_comp.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../nc_test -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT tst_comp.o -MD -MP -MF $depbase.Tpo -c -o tst_comp.o tst_comp.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_comp tst_comp.o -lm ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_comp tst_comp.o -L/shecky/local_par_old/lib ../libsrc4/.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_comp2.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../nc_test -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT tst_comp2.o -MD -MP -MF $depbase.Tpo -c -o tst_comp2.o tst_comp2.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_comp2 tst_comp2.o -lm ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_comp2 tst_comp2.o -L/shecky/local_par_old/lib ../libsrc4/.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_nans.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../nc_test -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT tst_nans.o -MD -MP -MF $depbase.Tpo -c -o tst_nans.o tst_nans.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_nans tst_nans.o -lm ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_nans tst_nans.o -L/shecky/local_par_old/lib ../libsrc4/.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_unicode.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I../nc_test -I../libsrc4 -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT tst_unicode.o -MD -MP -MF $depbase.Tpo -c -o tst_unicode.o tst_unicode.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L/shecky/local_par_old/lib -o tst_unicode tst_unicode.o -lm ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_unicode tst_unicode.o -L/shecky/local_par_old/lib ../libsrc4/.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm make[3]: Leaving directory `/shecky/n4_test/ncdump' make check-TESTS make[3]: Entering directory `/shecky/n4_test/ncdump' *** Testing ncgen and ncdump using some test CDL files. *** creating tst_small.nc from ref_tst_small.cdl... *** creating tst_small.cdl from tst_small.nc... *** creating test0.nc from test0.cdl... *** creating test1.cdl from test0.nc... *** creating test1.nc from test1.cdl... *** creating test2.cdl from test1.nc... *** checking that test1.cdl and test2.nc are the same... *** All tests of ncgen and ncdump using test0.cdl passed! PASS: run_tests.sh *** Testing ncgen and ncdump with 64-bit offset format. *** creating test0.nc from test0.cdl... *** creating test1.cdl from test0.nc... *** creating test1.nc from test1.cdl... *** creating test2.cdl from test1.nc... *** All ncgen and ncdump with 64-bit offset format tests passed! PASS: tst_64bit.sh PASS: ctest PASS: ctest64 *** Testing ncgen and ncdump test output for classic format. *** creating ctest1.cdl from ctest0.nc... *** creating c0.nc from c0.cdl... *** creating c1.cdl from c0.nc... *** comparing ncdump of C program output (ctest1.cdl) with c1.cdl... *** test output for ncdump -k *** test output for ncdump -x *** creating tst_ncml.nc from tst_ncml.cdl *** creating c1.ncml from tst_ncml.nc *** comparing ncdump -x of generated file with ref1.ncml ... *** All ncgen and ncdump test output for classic format passed! *** Testing ncgen and ncdump test output for 64-bit offset format. *** creating ctest1.cdl from test0_64.nc... *** creating c0.nc from c0.cdl... *** creating c1.cdl from c0.nc... *** comparing ncdump of C program output (ctest1_64.cdl) with c1.cdl... *** test output for ncdump -k *** All ncgen and ncdump test output for 64-bit offset format passed! PASS: tst_output.sh *** testing length of classic file *** testing length of classic file written with NOFILL *** testing length of rewritten classic file *** testing length of rewritten classic file written with NOFILL *** testing length of 64-bit offset file *** testing length of 64-bit offset file written with NOFILL *** testing length of rewritten 64-bit offset file *** testing length of rewritten 64-bit offset file written with NOFILL *** testing length of one-record-variable classic file *** testing length of one-record-variable classic file written with NOFILL *** testing length of one-record-variable 64-bit offset file *** testing length of one-record-variable 64-bit offset file written with NOFILL PASS: tst_lengths.sh *** creating UTF-8 test file tst_utf8.nc...ok. *** Tests successful! PASS: tst_utf8 *** Testing ncgen and ncdump for UTF8 support... *** creating classic offset file with utf8 characters... *** dump and compare utf8 output... *** creating 64-bit offset file with utf8 characters... *** (64 bit) dump and compare utf8 output... *** dumping tst_utf8.nc to tst_utf8.cdl... *** comparing tst_utf8.cdl with tst8.cdl... *** All utf8 tests of ncgen and ncdump passed! PASS: run_utf8_tests.sh *** Creating test files for ncdump. *** creating nested group file tst_solar_1.nc...ok. *** checking nested group file tst_solar_1.nc...ok. *** creating file with VLEN tst_solar_2.nc...ok. *** creating file with compound type tst_solar_cmp.nc...ok. *** Tests successful! PASS: tst_create_files *** creating nested group file tst_group_data.nc...ok. *** Tests successful! PASS: tst_group_data *** creating enum test file tst_enum_data.nc...ok. *** Tests successful! PASS: tst_enum_data *** creating opaque test file tst_opaque_data.nc...ok. *** Tests successful! PASS: tst_opaque_data *** Tests successful! PASS: tst_string_data *** creating vlen test file tst_vlen_data.nc...ok. *** Tests successful! PASS: tst_vlen_data *** creating compound test file tst_comp.nc...ok. *** Tests successful! PASS: tst_comp *** creating another compound test file tst_comp2.nc...ok. *** Tests successful! PASS: tst_comp2 *** creating NaN test file tst_nans.nc...ok. *** Tests successful! PASS: tst_nans *** Testing ncgen and ncdump test output for netCDF-4 format. *** creating netcdf-4 file c0.nc from c0.cdl... *** creating c1.cdl from c0.nc... *** comparing c1.cdl with ref_ctest1_nc4.cdl... *** Testing ncgen and ncdump test output for netCDF-4 classic format. *** creating netcdf-4 classic file c0.nc from c0.cdl... *** creating c1.cdl from c0.nc... *** comparing c1.cdl with ref_ctest1_nc4c.cdl... *** Testing ncdump output for netCDF-4 features. *** dumping tst_solar_1.nc to tst_solar_1.cdl... *** comparing tst_solar_1.cdl with ref_tst_solar_1.cdl... *** dumping tst_solar_2.nc to tst_solar_2.cdl... *** comparing tst_solar_2.cdl with ref_tst_solar_2.cdl... *** dumping tst_group_data.nc to tst_group_data.cdl... *** comparing tst_group_data.cdl with ref_tst_group_data.cdl... *** dumping tst_enum_data.nc to tst_enum_data.cdl... *** comparing tst_enum_data.cdl with ref_tst_enum_data.cdl... *** dumping tst_opaque_data.nc to tst_opaque_data.cdl... *** comparing tst_opaque_data.cdl with ref_tst_opaque_data.cdl... *** dumping tst_vlen_data.nc to tst_vlen_data.cdl... *** comparing tst_vlen_data.cdl with ref_tst_vlen_data.cdl... *** dumping tst_comp.nc to tst_comp.cdl... *** comparing tst_comp.cdl with ref_tst_comp.cdl... *** creating NaN test file tst_nans.nc...ok. *** Tests successful! *** creating tst_nans.cdl from tst_nans.nc *** comparing ncdump of generated file with ref_tst_nans.cdl ... *** dumping tst_unicode.nc to tst_unicode.cdl... *** creating UTF-8 test file tst_unicode.nc...ok. *** Tests successful! *** generating tst_nans.nc *** All ncgen and ncdump test output for netCDF-4 format passed! PASS: tst_netcdf4.sh *** Checking HDF5 file c0.nc. *** Checking HDF5 objcts...ok. *** Tests successful! PASS: tst_h_rdc0 *** creating UTF-8 test file tst_unicode.nc...ok. *** Tests successful! PASS: tst_unicode =================== All 20 tests passed =================== make[3]: Leaving directory `/shecky/n4_test/ncdump' make[2]: Leaving directory `/shecky/n4_test/ncdump' make[1]: Leaving directory `/shecky/n4_test/ncdump' Making check in nc_test make[1]: Entering directory `/shecky/n4_test/nc_test' make tst_small nc_test tst_misc tst_norm tst_names make[2]: Entering directory `/shecky/n4_test/nc_test' depbase=`echo tst_small.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT tst_small.o -MD -MP -MF $depbase.Tpo -c -o tst_small.o tst_small.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L../libsrc4 -L/shecky/local_par_old/lib -o tst_small tst_small.o -lm ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_small tst_small.o -L/shecky/n4_test/libsrc4 -L/shecky/local_par_old/lib ../libsrc4/.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo nc_test.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT nc_test.o -MD -MP -MF $depbase.Tpo -c -o nc_test.o nc_test.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo error.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT error.o -MD -MP -MF $depbase.Tpo -c -o error.o error.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo test_get.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT test_get.o -MD -MP -MF $depbase.Tpo -c -o test_get.o test_get.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo test_put.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT test_put.o -MD -MP -MF $depbase.Tpo -c -o test_put.o test_put.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo test_read.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT test_read.o -MD -MP -MF $depbase.Tpo -c -o test_read.o test_read.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo test_write.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT test_write.o -MD -MP -MF $depbase.Tpo -c -o test_write.o test_write.c &&\ mv -f $depbase.Tpo $depbase.Po test_write.c: In function 'test_nc_set_default_format': test_write.c:2041: warning: 'version' may be used uninitialized in this function depbase=`echo util.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT util.o -MD -MP -MF $depbase.Tpo -c -o util.o util.c &&\ mv -f $depbase.Tpo $depbase.Po util.c: In function 'hash': util.c:310: warning: 'result' may be used uninitialized in this function /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L../libsrc4 -L/shecky/local_par_old/lib -o nc_test nc_test.o error.o test_get.o test_put.o test_read.o test_write.o util.o -lm ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o nc_test nc_test.o error.o test_get.o test_put.o test_read.o test_write.o util.o -L/shecky/n4_test/libsrc4 -L/shecky/local_par_old/lib ../libsrc4/.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_misc.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT tst_misc.o -MD -MP -MF $depbase.Tpo -c -o tst_misc.o tst_misc.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L../libsrc4 -L/shecky/local_par_old/lib -o tst_misc tst_misc.o -lm ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_misc tst_misc.o -L/shecky/n4_test/libsrc4 -L/shecky/local_par_old/lib ../libsrc4/.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_norm.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT tst_norm.o -MD -MP -MF $depbase.Tpo -c -o tst_norm.o tst_norm.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L../libsrc4 -L/shecky/local_par_old/lib -o tst_norm tst_norm.o -lm ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_norm tst_norm.o -L/shecky/n4_test/libsrc4 -L/shecky/local_par_old/lib ../libsrc4/.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm depbase=`echo tst_names.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ mpicc -DHAVE_CONFIG_H -I. -I.. -I../fortran -I.. -I../libsrc4 -I/shecky/local_par_old/include -g -O2 -MT tst_names.o -MD -MP -MF $depbase.Tpo -c -o tst_names.o tst_names.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ../libtool --tag=CC --mode=link mpicc -g -O2 -L../libsrc4 -L/shecky/local_par_old/lib -o tst_names tst_names.o -lm ../libsrc4/libnetcdf.la -lhdf5_hl -lhdf5 -lm libtool: link: mpicc -g -O2 -o tst_names tst_names.o -L/shecky/n4_test/libsrc4 -L/shecky/local_par_old/lib ../libsrc4/.libs/libnetcdf.a /shecky/local_par_old/lib/libhdf5_hl.a /shecky/local_par_old/lib/libhdf5.a -lz -lm make[2]: Leaving directory `/shecky/n4_test/nc_test' make check-TESTS make[2]: Entering directory `/shecky/n4_test/nc_test' *** Testing small files. Switching to netCDF-4 format (with NC_CLASSIC_MODEL). *** testing simple small file with a global attribute...HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Adeprec.c line 214 in H5Aopen_name(): can't open attribute major: Attribute minor: Can't open object #001: H5A.c line 860 in H5A_open_by_name(): unable to load attribute info from object header major: Attribute minor: Unable to initialize object #002: H5Oattribute.c line 504 in H5O_attr_open_by_name(): can't locate attribute major: Attribute minor: Object not found HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Adeprec.c line 214 in H5Aopen_name(): can't open attribute major: Attribute minor: Can't open object #001: H5A.c line 860 in H5A_open_by_name(): unable to load attribute info from object header major: Attribute minor: Unable to initialize object #002: H5Oattribute.c line 504 in H5O_attr_open_by_name(): can't locate attribute major: Attribute minor: Object not found HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Adeprec.c line 214 in H5Aopen_name(): can't open attribute major: Attribute minor: Can't open object #001: H5A.c line 860 in H5A_open_by_name(): unable to load attribute info from object header major: Attribute minor: Unable to initialize object #002: H5Oattribute.c line 504 in H5O_attr_open_by_name(): can't locate attribute major: Attribute minor: Object not found HDF5-DIAG: Error detected in HDF5 (1.8.1) MPI-process 0: #000: H5Adeprec.c line 214 in H5Aopen_name(): can't open attribute major: Attribute minor: Can't open object #001: H5A.c line 860 in H5A_open_by_name(): unable to load attri